Table 2

Selection of genes differentially expressed during ripening.

Probe ID

2007 34vs32

2007 35vs32

2007 36vs32

2008 35vs32

2008 36vs32

Unique gene 12× ID

Annotation


CARBOHYDRATE AND AMINO ACID METABOLISMS


VVTU1012_at

.

.

1.77

.

1.61

GSVIVT01033747001

Pyruvate kinase, cytosolic isozyme


VVTU1135_at

3.64

3.82

5.69

2.07

2.77

GSVIVT01012723001

Soluble starch synthase 3, chloroplast precursor


VVTU12019_s_at

.

4.57

5.37

2.3

4.07

GSVIVT01022356001

Aldehyde dehydrogenase


VVTU12208_at

.

-4

-9.68

-2.33

-8.28

GSVIVT01011979001

Phosphoenolpyruvate carboxylase


VVTU12879_at

.

2.73

2.19

2.78

2.37

GSVIVT01024263001

RCP1 (ROOT CAP 1)


VVTU16699_s_at

.

-7.79

-20.35

-2.1

-12.01

GSVIVT01024174001

Fructose-bisphosphate aldolase, chloroplast precursor


VVTU16744_s_at

-1.62

-1.72

-1.82

.

-2.66

GSVIVT01015018001

Sucrose synthase


VVTU17960_s_at

.

.

1.59

.

1.72

GSVIVT01033791001

Fructose-bisphosphate aldolase cytoplasmic isozyme


VVTU1903_at

.

.

-2.26

.

-1.67

GSVIVT01016173001

Malate dehydrogenase [NADP], chloroplast precursor (NADP-MDH)


VVTU1967_s_at

.

1.54

1.94

1.84

2.09

GSVIVT01014206001

Phosphoenolpyruvate carboxylase


VVTU2658_at

.

.

1.5

1.54

1.58

GSVIVT01011700001

Phosphoglucomutase, cytoplasmic


VVTU4210_at

4.86

12.95

23.65

7.73

14.17

GSVIVT01033062001

Alcohol dehydrogenase


VVTU4280_at

3.26

10

13.91

7.05

12.89

GSVIVT01037186001

Sucrose-phosphate synthase 1


VVTU5246_at

.

.

2.14

.

1.86

GSVIVT01006474001

Malate dehydrogenase glyoxysomal


VVTU5612_at

.

-1.85

-4.85

.

-3.3

GSVIVT01013403001

Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor


VVTU7116_at

.

1.82

2.38

1.81

2.19

GSVIVT01008714001

Alpha-amylase/1,4-alpha-D-glucan glucanohydrolase


VVTU8170_at

.

-2.21

-4.09

-1.76

-2.67

GSVIVT01032446001

Glycogen synthase kinase 3 beta


VVTU9506_at

1.54

2.57

1.65

2.66

.

GSVIVT01004839001

Snf1-related protein kinase srk2f


VVTU11854_s_at

.

1.79

1.82

1.51

2.08

GSVIVT01000391001

Glutamate decarboxylase 1 (GAD 1)


VVTU13950_s_at

-1.61

-4.55

-28.07

-2.79

-25.73

GSVIVT01033402001

Glutamate dehydrogenase 1


VVTU14998_at

.

.

4.38

.

2.72

GSVIVT01034731001

Gamma-aminobutyric acid transporter


VVTU22880_s_at

.

1.64

2.02

1.85

3.24

GSVIVT01016467001

Pyrroline-5-carboxylate synthetase


VVTU35297_s_at

.

.

1.55

.

1.7

GSVIVT01036689001

Isocitrate dehydrogenase, chloroplast precursor


VVTU35625_s_at

.

-2.57

-5.34

.

-2.93

GSVIVT01036719001

Succinate-semialdehyde dehydrogenase (SSADH1)


VVTU37879_s_at

.

-2.09

.

.

.

GSVIVT01038714001

GLT1 (NADH-dependent glutamate synthase 1 gene)


VVTU5646_at

.

3.17

3.09

2.18

3.15

GSVIVT01016390001

Proline transporter 1 (ProT1)


VVTU7588_at

.

-2.81

.

-1.73

-1.85

GSVIVT01036483001

Proline oxidase


VVTU977_at

.

.

1.68

.

1.68

GSVIVT01033607001

Cystathionine beta-lyase


STRESS RESPONSE


VVTU12535_s_at

.

.

5.35

.

4.41

GSVIVT01027990001

Glutathione-conjugate transporter (MRP10)


VVTU14104_s_at

.

.

1.73

.

2.13

GSVIVT01033815001

Monodehydroascorbate reductase


VVTU15985_at

.

.

1.59

.

.

GSVIVT01025104001

L-ascorbate peroxidase 1, cytosolic (APX1)


VVTU16784_s_at

.

2.43

3.15

2.94

4.68

GSVIVT01019766001

Phospholipid hydroperoxide glutathione peroxidase


VVTU1974_s_at

.

52.07

88.22

11.76

189.67

GSVIVT01035256001

Glutathione S-transferase 26 GSTF12


VVTU23718_at

.

2.05

.

1.74

2.42

GSVIVT01037479001

L-ascorbate oxidase


VVTU27380_s_at

.

-1.71

-2.42

.

-2.27

GSVIVT01021793001

GDP-mannose 3,5-epimerase 1


VVTU35602_s_at

-1.74

.

-4

.

-1.69

GSVIVT01025551001

L-ascorbate peroxidase 1, cytosolic (APX1)


VVTU38305_s_at

.

3.59

1.63

2.34

2.53

GSVIVT01003998001

Latex cyanogenic beta glucosidase


VVTU40144_at

.

.

.

1.62

.

.

Dehydroascorbate reductase


VVTU40443_s_at

1.94

1.63

1.97

1.83

2.12

GSVIVT01026951001

Beta-cyanoalanine synthase


VVTU4641_at

.

-2.92

-15.77

-1.58

-8.94

GSVIVT01009079001

L-ascorbate peroxidase, chloroplast


VVTU4643_at

.

.

.

-2.03

-2.51

GSVIVT01010646001

L-idonate dehydrogenase


VVTU4990_at

.

2.11

1.97

3.08

2.44

GSVIVT01019757001

Gamma-glutamylcysteine synthetase


VVTU5671_s_at

-2.05

-2.59

-2.86

.

.

GSVIVT01005966001

Dehydroascorbate reductase


VVTU6270_at

.

1.55

2.08

.

1.85

GSVIVT01011626001

Myrosinase precursor


VVTU687_at

.

145.08

240.58

71.81

373.26

GSVIVT01022752001

Anthraniloyal-CoA: methanol anthraniloyal transferase


VVTU7379_at

.

2

1.6

3.1

2.47

GSVIVT01029079001

Glutathione reductase


VVTU8069_at

.

.

-3.45

.

-2.58

GSVIVT01033574001

L-Galactono-1,4-lactone dehydrogenase


SECONDARY METABOLISM


VVTU13083_at

.

-15.92

-10.95

-7.51

-7.09

GSVIVT01006396001

Anthocyanidin reductase


VVTU13266_s_at

-3.1

-5.11

-3.57

-4.5

-2.72

GSVIVT01009731001

Isoflavone reductase protein 4


VVTU13618_x_at

3.48

2.48

.

2.75

.

GSVIVT01028812001

UDP-glucose: anthocyanidin 5,3-O-glucosyltransferase


VVTU13951_at

.

.

3.24

.

1.79

GSVIVT01022411001

Isoflavone reductase


VVTU17578_s_at

.

12.13

14.82

5.19

29.13

GSVIVT01024419001

UDP-glucose:flavonoid 3-O-glucosyltransferase


VVTU20756_at

-3.14

-3.56

-4.09

-2.73

-3.17

GSVIVT01023841001

Dihydroflavonol-4-reductase


VVTU22627_at

.

.

.

.

2.1

GSVIVT01000191001

CYP81E1 Isoflavone 2'-hydroxylase


VVTU39787_s_at

.

-2.43

.

-2.3

4.3

GSVIVT01018781001

Flavonone- 3-hydroxylase


VVTU9453_at

.

.

7.92

1.87

4.75

GSVIVT01019691001

Quercetin 3-O-methyltransferase 1


VVTU9714_at

3.43

4.02

5.02

2.81

3.82

GSVIVT01021355001

Flavonol synthase


VVTU11849_s_at

.

2.15

3.41

1.5

2.64

GSVIVT01026510001

Alcohol dehydrogenase 6


VVTU13316_s_at

.

.

.

-2.21

.

GSVIVT01036331001

(-)-Germacrene D synthase


VVTU21725_at

.

5.59

7.3

7.18

9.32

GSVIVT01026829001

(+)-Neomenthol dehydrogenase


VVTU2626_at

2.55

35.87

19.1

18.1

15.87

GSVIVT01008069001

Isopiperitenol dehydrogenase


VVTU27826_x_at

.

2.5

2.18

1.55

2.01

GSVIVT01003150001

Cinnamyl alcohol dehydrogenase


VVTU33502_at

2.75

.

-2.96

.

-3.52

GSVIVT01032178001

Cinnamyl alcohol dehydrogenase


VVTU37595_s_at

.

2.08

.

1.86

.

GSVIVT01030474001

Hydroperoxide lyase (HPL1)


VVTU4754_at

-1.64

-4.03

-6.42

-4.25

-7.87

GSVIVT01008854001

Caffeic acid methyltransferase


VVTU8254_at

.

4.4

7.29

2.5

2.95

GSVIVT01036862001

9-cis-epoxycarotenoid dioxygenase


METABOLISM AND SIGNALING OF GROWTH REGULATORS


VVTU1335_at

1.65

-6.21

-7.81

-3.38

-6.13

GSVIVT01000176001

Indole-3-acetic acid-amido synthetase GH3.2


VVTU16083_at

.

.

-2.96

.

-2.18

GSVIVT01030905001

Auxin efflux carrier family


VVTU16124_at

.

.

-2.05

-1.82

-2.87

GSVIVT01031663001

PIN1


VVTU1813_at

-3.17

-12.35

-48.38

-4.69

-33.36

GSVIVT01017046001

IAA9


VVTU18738_s_at

.

14.93

37.41

22.78

87.35

GSVIVT01038622001

Auxin-responsive SAUR29


VVTU2445_s_at

-2.2

-13.15

-17.4

-6.43

-9.33

GSVIVT01015350001

Auxin-responsive protein IAA27


VVTU2614_s_at

.

2.08

1.68

1.5

1.79

GSVIVT01033011001

Transport inhibitor response 1 protein


VVTU3361_at

3.34

9.44

9.88

6.46

9.06

GSVIVT01017158001

IAA19


VVTU35572_s_at

2.81

2.25

4.41

3.04

8.58

GSVIVT01020159001

IAA-amino acid hydrolase 1 (ILR1)


VVTU3560_at

-1.83

.

2.93

.

3.86

GSVIVT01037892001

Indole-3-acetic acid-amido synthetase GH3.8


VVTU35909_s_at

.

-2.42

.

-2.25

-1.69

GSVIVT01026429001

Auxin Efflux Carrier


VVTU38338_x_at

-1.59

-11.61

-14.02

-9.85

-22.64

GSVIVT01024135001

Auxin-responsive SAUR31


VVTU7869_at

-5.63

-6.03

-10.54

-6.2

-4.14

GSVIVT01010995001

Transport inhibitor response 1


VVTU12042_at

1.76

.

.

.

.

GSVIVT01005455001

1-Aminocyclopropane-1-carboxylate synthase


VVTU12870_s_at

.

.

1.83

.

2.14

GSVIVT01025105001

MAPK (MPK3)


VVTU13344_at

.

-1.68

-2.66

.

-4.88

GSVIVT01006065001

1-Aminocyclopropane-1-carboxylate oxidase 1


VVTU1588_at

.

.

1.62

.

1.99

GSVIVT01038085001

Ethylene receptor 1 (ETR1)


VVTU18607_s_at

3.66

29.17

28.93

14.04

40.01

GSVIVT01035911001

Ethylene-responsive transcription factor ERF003


VVTU19389_s_at

.

.

1.73

.

2.05

GSVIVT01036213001

Ethylene receptor (EIN4)


VVTU2683_s_at

.

-1.8

.

-2.23

.

GSVIVT01035856001

EIN3-binding F-box protein 2


VVTU35437_at

.

-1.58

-5.17

2.26

2.62

.

Ethylene-responsive transcription factor ERF105


VVTU5165_at

.

-2.11

-1.79

.

-1.57

GSVIVT01008900001

1-Aminocyclopropane-1-carboxylate synthase


VVTU5909_at

.

1.9

1.59

1.87

1.62

GSVIVT01011670001

1-Aminocyclopropane-1-carboxylate oxidase


VVTU8172_at

.

.

2.31

2.76

12.06

GSVIVT01004798001

Ethylene responsive element binding factor 1


VVTU8555_at

.

-3.58

-4.58

-2.09

-5.28

GSVIVT01037473001

Ethylene-insensitive 3 (EIN3)


VVTU11913_at

-2.04

-5.96

-11.68

-3.88

-16.02

GSVIVT01018733001

Jasmonate O-methyltransferase


VVTU16057_at

.

9.26

10.63

5.74

7.16

GSVIVT01009616001

Allene oxide synthase


VVTU1657_s_at

-2.04

.

-2.45

-2.41

-2.7

GSVIVT01005061001

Methyl jasmonate esterase


VVTU16654_at

1.58

2.35

1.62

1.89

1.77

GSVIVT01031706001

IMP dehydrogenase


VVTU17030_s_at

.

-11.17

-8.28

.

-4.33

GSVIVT01025923001

12-Oxophytodienoate reductase 2


VVTU23697_at

.

1.6

2.16

1.99

2.72

GSVIVT01016368001

Coronatine-insensitive protein 1


VVTU3032_at

.

.

.

.

1.67

GSVIVT01027057001

JAR1-like protein


VVTU34392_at

2.43

.

.

.

.

GSVIVT01013156001

MYC jasmonic acid 3


VVTU35149_at

.

-1.72

.

-1.55

.

GSVIVT01024198001

Enhanced disease susceptibility 5 EDS5


VVTU39811_s_at

.

2.76

50.75

.

38.44

GSVIVT01021514001

Jasmonate ZIM domain-containing protein 8


VVTU4273_s_at

-1.53

.

-1.58

.

-1.98

GSVIVT01008453001

Jasmonate ZIM domain-containing protein 3


VVTU7003_at

-2.47

-12.82

-13.47

-6.21

-13.03

GSVIVT01036445001

Allene oxide cyclase


VVTU7560_at

.

.

2.04

1.65

2.99

GSVIVT01015181001

Regulatory protein NPR1 (Nonexpresser of PR genes 1)


VVTU1269_s_at

.

1.52

.

1.56

.

GSVIVT01020222001

Spermidine synthase


VVTU12839_at

.

1.64

2.39

3.44

4.27

GSVIVT01024167001

Arginine decarboxylase (Fragment)


VVTU12964_s_at

1.88

.

1.81

1.8

2.66

.

S-Adenosylmethionine decarboxylase proenzyme


VVTU37047_at

.

.

1.87

.

3.11

GSVIVT01007669001

Copper amine oxidase


VVTU5224_at

.

.

2.17

.

1.51

GSVIVT01028700001

Spermine synthase


VVTU5226_at

.

2.19

1.76

1.69

2.42

GSVIVT01020812001

Amine oxidase


VVTU6472_at

-2.27

2.07

.

1.86

2.07

GSVIVT01004079001

Copper amine oxidase


VVTU8738_s_at

.

2.3

2.17

.

.

GSVIVT01033651001

S-Adenosylmethionine synthetase


VVTU12347_s_at

.

.

.

2.03

.

GSVIVT01009074001

SnRK2-8


VVTU19049_s_at

.

.

2.01

.

1.95

GSVIVT01037491001

UBP1 interacting protein 2a (UBA2a)


VVTU22232_at

.

-1.91

-2.11

.

.

GSVIVT01003554001

Snf1 protein kinase 2-3 akip ost1


VVTU28731_s_at

2.01

4.9

4.9

4.67

3.13

GSVIVT01015308001

ABI1 (ABA insensitive 1)


VVTU14956_at

2.22

1.89

1.75

1.8

1.55

GSVIVT01008164001

BIM1 (BES1-interacting Myc-like protein 1)


VVTU24849_at

.

-1.92

-1.91

-3.07

-4.02

GSVIVT01017237001

CYP734A7 castasterone 26-hydroxylase


VVTU4905_s_at

.

.

-2.3

-2.41

-2.1

.

Brassinosteroid-responsive ring-H2 (BRH1)


VVTU647_at

.

-12.51

-17.26

-3.26

-21.67

GSVIVT01036558001

Brassinosteroid-6-oxidase


VVTU20270_s_at

-1.93

.

3.68

.

7.79

GSVIVT01033610001

ARR3 typeA


VVTU28950_s_at

.

-4.38

-11.11

-1.85

-3.95

GSVIVT01004944001

Cytokinin-repressed protein CR9


VVTU31519_s_at

3.4

.

.

1.6

.

GSVIVT01027443001

Pseudo-response regulator 9 (APRR9)


VVTU9094_s_at

.

-5.82

-7.62

-5.17

-14.3

GSVIVT01035468001

Cytokinin dehydrogenase 7


VVTU9297_at

-2.85

-8.33

-6.37

-3.83

-3.2

GSVIVT01007835001

ARR6 typeA


VVTU9337_at

2.81

2.61

4.69

1.92

6.66

GSVIVT01035051001

ARR1 typeB


VVTU13918_at

.

10.7

40.6

27.15

38.26

GSVIVT01031830001

Gibberellin 20 oxidase 2


VVTU15195_at

.

-1.59

4.64

.

2.89

GSVIVT01022014001

Gibberellin receptor GID1L1


VVTU1752_at

3.79

12.25

12.84

4.95

4.98

GSVIVT01011037001

Gibberellin receptor GID1L2


VVTU7332_at

-2.92

-6.26

-6.69

-4.5

-7.87

GSVIVT01009099001

Gibberellin 20 oxidase 2


VVTU8591_at

.

-4.73

-4.46

-4.09

-5.78

GSVIVT01034945001

Gibberellin 2-oxidase


SIGNAL TRANSDUCTION


VVTU11835_at

.

1.55

.

1.76

1.62

GSVIVT01018839001

MADS box transcription factor TM6 (TM6) APETALA3


VVTU17564_s_at

.

8.95

11.56

4.78

18.34

GSVIVT01022664001

Myb VvMYBA3 [Vitis vinifera]


VVTU18199_s_at

.

.

1.62

1.76

1.85

GSVIVT01033067001

SEPALLATA3


VVTU2522_at

.

1.56

2.63

.

3.24

GSVIVT01016175001

NAC domain-containing protein 78


VVTU27392_s_at

.

3.53

4.76

2.16

3.94

.

Scarecrow-like transcription factor 8 (SCL8)


VVTU3046_s_at

.

-6.64

-5.33

-2.63

-3.25

GSVIVT01027182001

MYBPA1 protein [Vitis vinifera]


VVTU3183_at

.

2.05

.

1.54

.

GSVIVT01024921001

Zinc finger (C3HC4-type RING finger)


VVTU3258_at

-1.75

-126.42

-210.41

-28.95

-221.25

GSVIVT01037819001

LIM domain protein WLIM1


VVTU37071_at

.

.

.

.

2.06

GSVIVT01034155001

Scarecrow-like transcription factor 9 (SCL9)


VVTU40803_s_at

2.35

4.93

9.8

1.54

6.18

GSVIVT01034968001

WRKY DNA-binding protein 48


VVTU9543_at

.

2.12

8.24

1.77

8.89

GSVIVT01022269001

Myb TKI1 (TSL-KINASE INTERACTING PROTEIN 1)


VVTU11578_at

1.6

12.25

4.66

2.82

1.77

GSVIVT01008070001

Receptor protein kinase


VVTU11917_at

2.55

1.53

.

2.18

.

GSVIVT01019481001

BZip transcription factor G-BOX BINDING FACTOR 3


VVTU13369_at

.

1.85

.

1.97

.

GSVIVT01017690001

CBL-interacting protein kinase 1 (CIPK1)


VVTU2538_at

.

1.68

.

1.83

1.5

GSVIVT01033306001

CALCIUM-DEPENDENT PROTEIN KINASE 32 CPK32


VVTU26057_at

.

5.13

12.44

8.86

17.28

GSVIVT01016073001

STE20/SPS1 proline-alanine-rich protein kinase


VVTU27362_at

1.53

1.74

2.13

2.55

5.29

GSVIVT01034540001

bZIP transcription factor


VVTU3691_at

.

3.73

.

1.6

.

GSVIVT01010053001

Dof zinc finger protein DOF3.5


VVTU38545_at

.

1.76

3.18

.

3.59

GSVIVT01008327001

Wall-associated kinase 4


VVTU5563_at

.

2.6

3.52

2.09

2.53

GSVIVT01034897001

VirE2-interacting protein (VIP1)


VVTU8084_at

.

.

2.1

.

2.62

GSVIVT01036465001

Receptor protein kinase PERK1


VVTU9535_at

.

2.78

4.54

3.85

4.3

GSVIVT01002864001

Receptor protein kinase PERK1


VVTU9861_at

.

1.92

2.09

1.85

2.19

.

Wall-associated kinase


LIGHT SIGNALING, CIRCADIAN CLOCK, EPIGENETIC FACTORS AND TRANSPOSONS


VVTU22197_at

.

.

1.95

1.52

1.79

GSVIVT01007965001

Timing of CAB expression 1 protein


VVTU2284_at

.

1.76

4.05

.

3.36

GSVIVT01035337001

Early flowering 3


VVTU2454_s_at

2.4

.

1.77

3.04

2.15

GSVIVT01001405001

Gigantea protein


VVTU3515_s_at

-1.65

-1.58

-1.74

-1.89

-2.32

GSVIVT01027456001

Myb CCA1 (Circadian Clock Associated 1)


VVTU40867_x_at

.

2.19

.

2.47

2.44

GSVIVT01018044001

ELIP1 (Early Light-Inducible Protein)


VVTU5883_at

.

-1.59

.

2.17

2.7

GSVIVT01030081001

Phytochrome defective C (PHYC)


VVTU10989_at

-2.75

1.77

.

-2.1

1.55

GSVIVT01033746001

Retrotransposon protein, Ty1-copia subclass


VVTU11309_at

.

-1.72

-2.05

.

.

GSVIVT01032746001

Chromatin remodeling 42


VVTU12696_at

.

2.96

2.08

2.38

1.99

GSVIVT01033971001

Transposon protein, CACTA, En/Spm sub-class


VVTU15783_at

.

.

2.05

.

2.48

.

Retrotransposon protein, unclassified


VVTU2258_at

2.29

7.14

2.59

1.77

2.61

GSVIVT01010060001

DNA-3-methyladenine glycosidase I


VVTU32711_at

.

.

.

2.38

.

GSVIVT01017791001

Chromatin-remodeling protein 11


VVTU3690_at

1.53

2.15

3.56

2.05

3.61

GSVIVT01007671001

Histone deacetylase HDA6


VVTU38460_at

.

.

.

2.68

2.01

GSVIVT01026952001

ATBRM/CHR2 (Arabidopsis thaliana brahma)


VVTU5491_at

.

.

2.27

.

2.08

.

Transposase


VVTU5815_at

.

.

1.64

.

1.68

GSVIVT01020136001

Histone deacetylase complex, SIN3 component


VVTU6149_s_at

.

2.09

-1.85

1.54

.

GSVIVT01033869001

Transposon protein, Mutator sub-class


VVTU8524_at

-1.64

-1.75

-2.04

.

-1.57

.

Cytosine methyltransferase (DRM2)


VVTU8618_at

.

.

2.12

.

2.34

GSVIVT01007544001

Histone acetyltransferase ELP3


VVTU87_at

.

.

-2.41

.

-1.74

GSVIVT01007870001

Histone deacetylase HDA05


The selection considered a fold change ≥ 1.5 and FDR < 0.05 or fold change ≤ -.1.5 and FDR < 0.05).

Fortes et al. BMC Plant Biology 2011 11:149   doi:10.1186/1471-2229-11-149

Open Data