Syntenic gene searching between A. thaliana and B. rapa's three subgenomes. Taking the A. thaliana gene AT4G23980 as an example, search results are presented in a table. The first column lists the A. thaliana gene IDs, followed by genomic blocks in the ancestral karyotype. Tandem genes are packed, and only the first gene of the tandem array is listed (AT4G23990) while the others can be obtained by clicking 'tandem'. The next three columns show genes from the subgenomes, LF, MF1 and MF2 of B. rapa. For each row, listed genes are in syntenic relationships. Moving the cursor over an A. thaliana gene gives a floating box containing the gene's annotation, while moving the cursor over a B. rapa gene produces the supporting information of its syntenic relationship to the gene in A. thaliana.
Cheng et al. BMC Plant Biology 2011 11:136 doi:10.1186/1471-2229-11-136