Table 5

SSR survey in unigenes and genomic sequences from P. vulgaris, G. max, M. truncatula, and A. thaliana.

Type

P. vulgaris

G. max

M. truncatula

A. thaliana


Unigene

Genome

Unigene

Genome

Unigene

Genome

Unigene

Genome


Dinucleotide

548

3163

5944

99856

1903

6462

1914

8686

Trinucleotide

902

1213

5771

38411

2999

3532

3600

5180

Tetranucleotide

39

98

238

3954

165

314

34

155

Pentanucleotide

12

23

66

1161

53

63

8

38

Hexanucleotide

15

20

100

284

65

41

30

51

Total SSR

1516

4517

12119

143666

5158

10412

5586

14110

Total length (Mbp)

22.94

64.68

71.80

973.34

51.93

105.52

43.58

111.14

Average distance (kb)

15.13

14.32

5.92

6.78

10.07

10.13

7.80

7.88


Kalavacharla et al. BMC Plant Biology 2011 11:135   doi:10.1186/1471-2229-11-135

Open Data