Table 1

The numbers of transcript derived fragments (TDFs) in some of the biological function categories showing up- or down- regulated expression pattern in wheat (cv. Suwon 11) leaves inoculated with Puccinia striiformis f. sp. tritici (pathotype CYR23)

Expression pattern (% in category)


Function group

Number

Percentage (%)

Up (%)

Down (%)


1. Sequenced

255

10.5

187 (73.3)

68 (26.7)

Metabolism

11

4.3

8 (72.7)

3 (27.3)

Energy

34

13.3

26 (76.5)

8 (23.5)

Cell growth/division

3

1.2

2 (66.7)

1 (33.3)

Transcription

12

4.7

11 (91.7)

1 (8.3)

Protein synthesis

3

1.2

3

0

Protein destination and storage

6

2.4

3 (50.0)

3 (50.0)

Transporters

6

2.4

5 (83.3)

1 (16.7)

Intracellular traffic

1

0.4

1

0

Cell structure

2

0.8

2

0

Signal transduction

17

6.7

14 (82.4)

3 (17.6)

Disease/defense

18

7.1

15 (83.3)

3 (16.7)

Unclassified

107

42.0

72 (67.3)

35 (32.7)

Unclear classification

35

13.7

25 (71.4)

10 (28.6)

2. Unsequenced

2,182

89.5

1,600 (73.3)

582 (26.7)


Total

2,437

100.0

1,787 (73.3)

650 (26.7)


Wang et al. BMC Plant Biology 2010 10:9   doi:10.1186/1471-2229-10-9

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