Fosmid Key. The gene space diagrams that accompany this text share a common format for presentation of figures. Analysis of fosmids includes five horizontal panels: A through E (as depicted on the left side of the figure). Panel A graphically depicts the ab initio gene location and orientation predictions of the six FGENESH training models. Panel B depicts the outputs of Blastx searches of the GenBank non-redundant protein database, delimited to Arabidopsis. Panel C depicts the outputs of Blastn comparisons against Rosaceae ESTs. Panel D depicts the inferred locations and orientations of the putative gene sites inferred on the basis of Blastx homology-based analysis, and also depicts the locations of transposable element sites detected by structural analysis. Panel E provides a description of SSR content as detected by the SSRIT analysis. The information to the right provides a range of descriptive information that is found throughout Panels A-E. On the right side of the figure, the various icons used in the Fosmid Figures are defined.
Davis et al. BMC Plant Biology 2010 10:81 doi:10.1186/1471-2229-10-81