Open Access Research article

Identification and characterization of NAGNAG alternative splicing in the moss Physcomitrella patens

Rileen Sinha15, Andreas D Zimmer23, Kathrin Bolte247, Daniel Lang23, Ralf Reski345, Matthias Platzer6, Stefan A Rensing245* and Rolf Backofen145*

Author Affiliations

1 Bioinformatics group, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany

2 Faculty of Biology, University of Freiburg, Hauptstrasse 1, 79104 Freiburg, Germany

3 Plant Biotechnology, Faculty of Biology, University of Freiburg, Schaenzlestrasse 1, 79104 Freiburg, Germany

4 Freiburg Initiative for Systems Biology (FRISYS), University of Freiburg, Schaenzlestrasse 1, 79104 Freiburg, Germany

5 Centre for Biological Signalling Studies (bioss), University of Freiburg, Albertstr. 19, 79104 Freiburg, Germany

6 Genome Analysis, Leibniz Institute for Age Research - Fritz Lipmann Institute, Beutenbergstr. 11, 07745 Jena, Germany

7 Philipps-Universität Marburg, Laboratorium für Zellbiologie, Karl-von-Frisch Str., 35032 Marburg, Germany

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BMC Plant Biology 2010, 10:76  doi:10.1186/1471-2229-10-76

Published: 28 April 2010

Additional files

Additional file 1:

All NAGNAGs in Physcomitrella patens. Information on all 5,031 NAGNAGs in Physcomitrella patens, including gene name, EST name, genomic location, transcript support, and the predictions of the Naïve Bayes classifier.

Format: XLS Size: 2.8MB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 2:

Summarized experimental results.

Format: DOC Size: 94KB Download file

This file can be viewed with: Microsoft Word Viewer

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Additional file 3:

Perl script. The Perl script used for feature extraction.

Format: PERL Size: 2KB Download file

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Additional file 4:

Transcript support data. The transcript support data derived from the http://www.cosmoss.org webcite database.

Format: CSV Size: 1.1MB Download file

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Additional file 5:

Names file. Names file for combination with the script output.

Format: NAME Size: 1KB Download file

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