Table 3

RindPdigS clones showing the highest induction in response to P. digitatum infection according to macroarray hybridization

Clone/Cluster

Best BlastX match

Accession No.

E-value

No ESTs (RindPdigS)

No ESTs (RindPdig24)

I/W macroarraya

I/W

Northernb


P-18

hypothetical protein AN7411.2 [Aspergillus nidulans]

EAA61782.1

2E-28

3

0

P-32

short-chain dehydrogenase Tic32 [Pisum sativum]

AAS38575.1

3E-33

2

0

P-62

Caffeine synthase [Theobroma cacao]

BAE79730.1

2E-20

4

0

24.25

N14G12

No blast match

1

0

N17C02

No blast match

1

0

N17E11

expressed protein [Arabidopsis thaliana]

NP_190988.1

3E-06

1

0

P-43

Cytochrome P450 79A1 (Tyrosine N-monooxygenase

Q43135

3E-29

2

0

11.54

27.93

P-27

nectarin 5 [Nicotiana langsdorffii x Nicotiana sanderae]

AAP30841.1

7E-15

3

0

9.15 ± 0.77

P-31

ADP/ATP carrier protein [Penicillium chrysogenum]

BAC82547.1

1E-16

2

0

8.67

P-26

Unknown protein [Arabidopsis thaliana]

AAL32635.1

2E-24

2

0

8.23

N14G04

nectarin 5 [Nicotiana langsdorffii x Nicotiana sanderae]

AAP30841.1

4E-46

1

0

7.69

N06E04

polygalacturonase [Penicillium digitatum]

BAA77297.1

5E-22

1

1

7.52

P-10

Embryo-abundant protein-related [Arabidopsis thaliana]

NP_181669.1

3E-25

7

0

6.99 ± 0.77

*

N07B09

expressed protein [Arabidopsis thaliana]

NP_565660.1

2E-13

1

0

6.62

P-03

FAD-binding domain containing protein [Arabidopsis thaliana]

NP_181025.1

1.E-08

11

0

6.32 ± 1.35

*

N08F02

probable tropinone reductase [Arabidopsis thaliana]

C84693

2E-21

1

1

6.14

2.46

N11D06

EF1-alpha translation elongation factor [Sordaria macrospora]

CAA65435.1

3E-24

1

0

5.88

N08C11

chloroplast ribosomal protein L1 [Pisum sativum]

CAA58020.1

2E-50

1

5.56

N07E06

dehydration-responsive protein, [Arabidopsis thaliana]

NP_174468.1

4E-83

1

0

4.58

P-16

pleiotropic drug resistance like protein [Nicotiana tabacum])

BAB92011.1

2E-15

3

0

5.94 ± 5.64

2.86

P-21

P0468B07.6 [Oryza sativa]

NP_915910.1

7E-06

2

1

4.20 ± 0.24

7.90

N12G08

mitochondrial phosphate translocator [Medicago truncatula]

AH59632.1

2E-57

1

0

4.13

P-02

No blast match

11

0

4.76 ± 2.08

30.72

N13E10

cellular apoptosis susceptibility protein, putative [Arabidopsis thaliana]

NP_182175.1

2E-15

1

0

4.03

7.12

P-07

ACC oxidase [Citrus sinensis]

AAG49361.1

5E-36

9

4

4.05 ± 0.61


aGene expression ratios in infected (I) vs wounded (W) tissue according to macroarray hybridization.

bGene expression ratios in infected (I) vs wounded (W) tissue according to Northern hybridization.

*Expresion not detected in wounded tissue

González-Candelas et al. BMC Plant Biology 2010 10:194   doi:10.1186/1471-2229-10-194

Open Data