Table 4

Enrichment of putative MYB-target cis-elements in promoters of chilling upregulated genes.

Cluster

Motif

Putative elementa

Associated class of MYB (putative)b

% (TIC)c

e-value


C100A

AAAACCAT

MYB2-box-like

R2R3-MYB

75 (11.59)

6e-004


CTTTTGTT

GA response element-like

R1-MYB/R2R3-MYB

60 (12.03)

1e-004


TGTGGAAG

Pyrimidine box-like

R1-MYB/R2R3-MYB

55 (11.66)

3e-004


TGTGGAAG

MYB2-box-like

R2R3-MYB

52 (13.26)

6e-005


C99

CATTTGTT

GA response element-like

R1-MYB/R2R3-MYB

64 (12.23)

2e-004


GCTGTGGT

Pyrimidine box-like

R1-MYB/R2R3-MYB

56 (11.26)

3e-004


C99A

TTTTTTCA

Pyrimidine box-like

R1-MYB/R2R3-MYB

63 (13.88)

3e-004


G(A8)

Pyrimidine box-like

R1-MYB/R2R3-MYB

63 (13.88)

6e-005


C97

(c/t)(A7)

Pyrimidine box-like

R1-MYB/R2R3-MYB

73 (16.75)

2e-004


TAA(T6)

Pyrimidine box-like

R1-MYB/R2R3-MYB

67 (14.37)

4e-004


C97A

AAAATCAA

MYB2-box-like

R2R3-MYB

71 (12.93)

4e-004


AAAGAAAAA

Pyrimidine box-like

R1-MYB/R2R3-MYB

66 (15.13)

2e-004


ACACAAAC

GA response element-like

R1-MYB/R2R3-MYB

59 (11.48)

2e-004


TTCTTGCT

GA response element-like

R1-MYB/R2R3-MYB

59 (11.92)

2e-004


TTTTTTTTAA

Pyrimidine box-like

R1-MYB/R2R3-MYB

59 (16.60)

2e-005


TTGTTTTGT

GA response element-like

R1-MYB/R2R3-MYB

57 (12.93)

3e-004


ATTTAACA

GA response element-like

R1-MYB/R2R3-MYB

55 (11.99)

3e-004


GCTGCTGC

GA response element-like

R1-MYB/R2R3-MYB

50 (12.99)

8e-004


C94

TAGTTTTT

MYB1-box-like

R2R3-MYB

70 (11.74)

2e-004


CTCCCTCCG

GA response element-like

R1-MYB/R2R3-MYB

57 (13.64)

2e-004


AGCTGGAG

GA response element-like

R1-MYB/R2R3-MYB

55 (12.00)

9e-005


AGCATTTG

GA response element-like

R1-MYB/R2R3-MYB

51 (12.29)

5e-004


C91

TTCTTTTTTT

Pyrimidine box-like

R1-MYB/R2R3-MYB

58 (15.52)

4e-004


TTAGGGTTT

MYB2-box-like

R2R3-MYB

58 (12.70)

2e-004


C90A

TTTTTTCA

Pyrimidine box-like

R1-MYB/R2R3-MYB

63 (13.45)

4e-004


AAATCCAA

GA response element-like

R1-MYB/R2R3-MYB

57 (12.72)

1e-003


TTAGTTTAT

MYB1-box-like

R2R3-MYB

52 (12.89)

2e-004


TTGTTTTT

GA response element-like

R1-MYB/R2R3-MYB

51 (13.14)

2e-004


C88A

GAAACCAT

MYB2-box-like

R2R3-MYB

78 (11.18)

1e-004


CGGTGGAT

MCB1/MCB2-like

R2R3-MYB

73 (11.07)

1e-004


TTTTTTCA

Pyrimidine box-like

R1-MYB/R2R3-MYB

69 (13.14

6e-004


AAACCCAA

GA response element-like

R1-MYB/R2R3-MYB

63 (12.32

2e-004


GGGGATCG

MYB2-box-like

R2R3-MYB

58 (11.82)

1e-004


GAAACCAT

MYB2-box-like

R2R3-MYB

58 (11.95)

1e-004


GTGATTAGC

MYB2-box-like

R2R3-MYB

55 (11.32)

9e-004


G(T8)

Pyrimidine box-like

R1-MYB/R2R3-MYB

52 (14.78)

7e-004


AGCTGGAG

GA response element-like

R1-MYB/R2R3-MYB

50 (11.89)

1e-004


C87A

TAAGTTTT

Pyrimidine box-like

R1-MYB/R2R3-MYB

65 (12.65)

8e-004


AACAATTT

GA response element-like

R1-MYB/R2R3-MYB

63 (11.80)

5e-004


AAACCATG

MYB2-box-like

R2R3-MYB

61 (12.27)

8e-004


GTTTTTTTT

Pyrimidine box-like

R1-MYB/R2R3-MYB

54 (15.01)

4e-004


ATATTTCC

Pyrimidine box-like

R1-MYB/R2R3-MYB

50 (12.51)

6e-004


C86

AAATCCAA

MYB2-box-like

R2R3-MYB

60 (12.33)

3e-004


AACCATGG

MYB2-box-like

R2R3-MYB

60 (11.10)

3e-004


C86A

TTTTTTCA

Pyrimidine box-like

R1-MYB/R2R3-MYB

72 (13.48)

3e-004


TTTTTATT

Pyrimidine box-like

R1-MYB/R2R3-MYB

68 (14.18)

2e-004


ATCATTTT

Pyrimidine box-like

R1-MYB/R2R3-MYB

62 (12.27)

7e-004


TCCCTTTT

Pyrimidine box-like

R1-MYB/R2R3-MYB

57 (13.18)

7e-004


ACATTTTT

Pyrimidine box-like

R1-MYB/R2R3-MYB

50 (13.18)

2e-004


C83

GGAAAAAA

Pyrimidine box-like

R1-MYB/R2R3-MYB

67 (13.45)

4e-004


C83A

GAAAAAGG

Pyrimidine box-like

R1-MYB/R2R3-MYB

61 (11.91)

4e-004


C80

AAATCCTT

GA response element-like

R1-MYB/R2R3-MYB

72 (11.89)

8e-005


TTTTTTCA

Pyrimidine box-like

R1-MYB/R2R3-MYB

55 (13.28)

4e-004


TTTTCAAT

Pyrimidine box-like

R1-MYB/R2R3-MYB

53 (12.23)

2e-003


C81

(c/g)(A9)

Pyrimidine box-like

R1-MYB/R2R3-MYB

68 (15.62)

3e-004


'

GG(A6)

Pyrimidine box-like

R1-MYB/R2R3-MYB

64 (13.23)

4e-004


(c/g)AT(A5)

Pyrimidine box-like

R1-MYB/R2R3-MYB

61 (12.19)

3e-004


ATATTTTC

Pyrimidine box-like

R1-MYB/R2R3-MYB

54 (12.51)

4e-004


C79

TTTTTTCA

Pyrimidine box-like

R1-MYB/R2R3-MYB

65 (13.14)

2e-003


GTGATATC

Pyrimidine box-like

R1-MYB/R2R3-MYB

62 (11.12)

6e-004


CATCTTTT

GA response element-like

R1-MYB/R2R3-MYB

53 (12.53)

3e-004


ATTAAATTA

Pyrimidine box-like

R1-MYB/R2R3-MYB

53 (13.65)

3e-004


C78

TTAGGTTTT

MYB2-box-like

R2R3-MYB

68 (12.28)

4e-004


CATTTGTT

GA response element-like

R1-MYB/R2R3-MYB

64 (12.23)

2e-004


GCTGTGGT

Pyrimidine box-like

R1-MYB/R2R3-MYB

56 (11.26)

3e-004


aHomology with motifs identified in other plant species (TRANSFAC, PLACE and AGRIS databases).

bPossible classes of associated MYB proteins based on recent phylogenetic classifications [50] and co-expression.

cPercent occurrence in critical promoters relative to background sequences (Total Information Content).

Yun et al. BMC Plant Biology 2010 10:16   doi:10.1186/1471-2229-10-16

Open Data