Table 4 |
|||||
|
Enrichment of putative MYB-target cis-elements in promoters of chilling upregulated genes. |
|||||
|
Cluster |
Motif |
Putative elementa |
Associated class of MYB (putative)b |
% (TIC)c |
e-value |
|
|
|||||
|
C100A |
AAAACCAT |
MYB2-box-like |
R2R3-MYB |
75 (11.59) |
6e-004 |
|
|
|||||
|
CTTTTGTT |
GA response element-like |
R1-MYB/R2R3-MYB |
60 (12.03) |
1e-004 |
|
|
|
|||||
|
TGTGGAAG |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
55 (11.66) |
3e-004 |
|
|
|
|||||
|
TGTGGAAG |
MYB2-box-like |
R2R3-MYB |
52 (13.26) |
6e-005 |
|
|
|
|||||
|
C99 |
CATTTGTT |
GA response element-like |
R1-MYB/R2R3-MYB |
64 (12.23) |
2e-004 |
|
|
|||||
|
GCTGTGGT |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
56 (11.26) |
3e-004 |
|
|
|
|||||
|
C99A |
TTTTTTCA |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
63 (13.88) |
3e-004 |
|
|
|||||
|
G(A8) |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
63 (13.88) |
6e-005 |
|
|
|
|||||
|
C97 |
(c/t)(A7) |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
73 (16.75) |
2e-004 |
|
|
|||||
|
TAA(T6) |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
67 (14.37) |
4e-004 |
|
|
|
|||||
|
C97A |
AAAATCAA |
MYB2-box-like |
R2R3-MYB |
71 (12.93) |
4e-004 |
|
|
|||||
|
AAAGAAAAA |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
66 (15.13) |
2e-004 |
|
|
|
|||||
|
ACACAAAC |
GA response element-like |
R1-MYB/R2R3-MYB |
59 (11.48) |
2e-004 |
|
|
|
|||||
|
TTCTTGCT |
GA response element-like |
R1-MYB/R2R3-MYB |
59 (11.92) |
2e-004 |
|
|
|
|||||
|
TTTTTTTTAA |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
59 (16.60) |
2e-005 |
|
|
|
|||||
|
TTGTTTTGT |
GA response element-like |
R1-MYB/R2R3-MYB |
57 (12.93) |
3e-004 |
|
|
|
|||||
|
ATTTAACA |
GA response element-like |
R1-MYB/R2R3-MYB |
55 (11.99) |
3e-004 |
|
|
|
|||||
|
GCTGCTGC |
GA response element-like |
R1-MYB/R2R3-MYB |
50 (12.99) |
8e-004 |
|
|
|
|||||
|
C94 |
TAGTTTTT |
MYB1-box-like |
R2R3-MYB |
70 (11.74) |
2e-004 |
|
|
|||||
|
CTCCCTCCG |
GA response element-like |
R1-MYB/R2R3-MYB |
57 (13.64) |
2e-004 |
|
|
|
|||||
|
AGCTGGAG |
GA response element-like |
R1-MYB/R2R3-MYB |
55 (12.00) |
9e-005 |
|
|
|
|||||
|
AGCATTTG |
GA response element-like |
R1-MYB/R2R3-MYB |
51 (12.29) |
5e-004 |
|
|
|
|||||
|
C91 |
TTCTTTTTTT |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
58 (15.52) |
4e-004 |
|
|
|||||
|
TTAGGGTTT |
MYB2-box-like |
R2R3-MYB |
58 (12.70) |
2e-004 |
|
|
|
|||||
|
C90A |
TTTTTTCA |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
63 (13.45) |
4e-004 |
|
|
|||||
|
AAATCCAA |
GA response element-like |
R1-MYB/R2R3-MYB |
57 (12.72) |
1e-003 |
|
|
|
|||||
|
TTAGTTTAT |
MYB1-box-like |
R2R3-MYB |
52 (12.89) |
2e-004 |
|
|
|
|||||
|
TTGTTTTT |
GA response element-like |
R1-MYB/R2R3-MYB |
51 (13.14) |
2e-004 |
|
|
|
|||||
|
C88A |
GAAACCAT |
MYB2-box-like |
R2R3-MYB |
78 (11.18) |
1e-004 |
|
|
|||||
|
CGGTGGAT |
MCB1/MCB2-like |
R2R3-MYB |
73 (11.07) |
1e-004 |
|
|
|
|||||
|
TTTTTTCA |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
69 (13.14 |
6e-004 |
|
|
|
|||||
|
AAACCCAA |
GA response element-like |
R1-MYB/R2R3-MYB |
63 (12.32 |
2e-004 |
|
|
|
|||||
|
GGGGATCG |
MYB2-box-like |
R2R3-MYB |
58 (11.82) |
1e-004 |
|
|
|
|||||
|
GAAACCAT |
MYB2-box-like |
R2R3-MYB |
58 (11.95) |
1e-004 |
|
|
|
|||||
|
GTGATTAGC |
MYB2-box-like |
R2R3-MYB |
55 (11.32) |
9e-004 |
|
|
|
|||||
|
G(T8) |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
52 (14.78) |
7e-004 |
|
|
|
|||||
|
AGCTGGAG |
GA response element-like |
R1-MYB/R2R3-MYB |
50 (11.89) |
1e-004 |
|
|
|
|||||
|
C87A |
TAAGTTTT |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
65 (12.65) |
8e-004 |
|
|
|||||
|
AACAATTT |
GA response element-like |
R1-MYB/R2R3-MYB |
63 (11.80) |
5e-004 |
|
|
|
|||||
|
AAACCATG |
MYB2-box-like |
R2R3-MYB |
61 (12.27) |
8e-004 |
|
|
|
|||||
|
GTTTTTTTT |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
54 (15.01) |
4e-004 |
|
|
|
|||||
|
ATATTTCC |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
50 (12.51) |
6e-004 |
|
|
|
|||||
|
C86 |
AAATCCAA |
MYB2-box-like |
R2R3-MYB |
60 (12.33) |
3e-004 |
|
|
|||||
|
AACCATGG |
MYB2-box-like |
R2R3-MYB |
60 (11.10) |
3e-004 |
|
|
|
|||||
|
C86A |
TTTTTTCA |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
72 (13.48) |
3e-004 |
|
|
|||||
|
TTTTTATT |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
68 (14.18) |
2e-004 |
|
|
|
|||||
|
ATCATTTT |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
62 (12.27) |
7e-004 |
|
|
|
|||||
|
TCCCTTTT |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
57 (13.18) |
7e-004 |
|
|
|
|||||
|
ACATTTTT |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
50 (13.18) |
2e-004 |
|
|
|
|||||
|
C83 |
GGAAAAAA |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
67 (13.45) |
4e-004 |
|
|
|||||
|
C83A |
GAAAAAGG |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
61 (11.91) |
4e-004 |
|
|
|||||
|
C80 |
AAATCCTT |
GA response element-like |
R1-MYB/R2R3-MYB |
72 (11.89) |
8e-005 |
|
|
|||||
|
TTTTTTCA |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
55 (13.28) |
4e-004 |
|
|
|
|||||
|
TTTTCAAT |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
53 (12.23) |
2e-003 |
|
|
|
|||||
|
C81 |
(c/g)(A9) |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
68 (15.62) |
3e-004 |
|
|
|||||
|
' |
GG(A6) |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
64 (13.23) |
4e-004 |
|
|
|||||
|
(c/g)AT(A5) |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
61 (12.19) |
3e-004 |
|
|
|
|||||
|
ATATTTTC |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
54 (12.51) |
4e-004 |
|
|
|
|||||
|
C79 |
TTTTTTCA |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
65 (13.14) |
2e-003 |
|
|
|||||
|
GTGATATC |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
62 (11.12) |
6e-004 |
|
|
|
|||||
|
CATCTTTT |
GA response element-like |
R1-MYB/R2R3-MYB |
53 (12.53) |
3e-004 |
|
|
|
|||||
|
ATTAAATTA |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
53 (13.65) |
3e-004 |
|
|
|
|||||
|
C78 |
TTAGGTTTT |
MYB2-box-like |
R2R3-MYB |
68 (12.28) |
4e-004 |
|
|
|||||
|
CATTTGTT |
GA response element-like |
R1-MYB/R2R3-MYB |
64 (12.23) |
2e-004 |
|
|
|
|||||
|
GCTGTGGT |
Pyrimidine box-like |
R1-MYB/R2R3-MYB |
56 (11.26) |
3e-004 |
|
|
|
|||||
|
aHomology with motifs identified in other plant species (TRANSFAC, PLACE and AGRIS databases). bPossible classes of associated MYB proteins based on recent phylogenetic classifications [50] and co-expression. cPercent occurrence in critical promoters relative to background sequences (Total Information Content). |
|||||
|
Yun et al. BMC Plant Biology 2010 10:16 doi:10.1186/1471-2229-10-16 |
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