Table 2

Enrichment of putative bZIP-target cis-elements in promoters of chilling upregulated genes.

Cluster

Motif

Putative elementa

Associated class of bZIP (putative)b

% (TIC)c

e-value


C100A

GGTTTGTA

as1/ocs/TGA-like

Groups D, I, S

71 (10.56)

5e-004


GAGGAAGA

as1/ocs/TGA-like

Groups D, I, S

69 (13.28)

4e-004


AAACAATG

as1/ocs/TGA-like

Groups D, I, S

61 (12.36)

9e-005


GCAATATA

as1/ocs/TGA-like*

Groups D, I, S

58 (11.64)

8e-004


C99

AAATTGATT

as1/ocs/TGA-like

Groups D, I, S

50 (14.12)

3e-004


C99A

TTTTGCTG

as1/ocs/TGA-like

Groups D, I, S

71 (11.97)

7e-004


TTGGAGAG

RSG element

bZIP

66 (11.78)

3e-004


CCGTGACA

as1/ocs/TGA-like*

Groups D, I, S

55 (11.52)

6e-004


TTTGTGTA

as1/ocs/TGA-like*

Groups D, I, S

51 (12.85)

7e-004


C97

ATGTTT(g/t)(a/g)(a/c)

as1/ocs/TGA-like*

Groups D, I, S

62 (12.32)

3e-004


GCG(a/c/t)ACAA

ABRE-like

Group-A

62 (11.44)

7e-004


ATATTTTGA

as1/ocs/TGA-like*

Groups D, I, S

54 (13.95)

4e-004


AGATTAAA

as1/ocs/TGA-like*

Groups D, I, S

52 (12.40)

1e-003


AATT(a/t)GAG

as1/ocs/TGA-like*

Groups D, I, S

50 (13.45)

8e-004


C97A

CGGCGGCGA

ABRE-like

Group-A

52 (14.65)

9e-004


C94

CGACGACG

as1/ocs/TGA-like

Groups D, I, S

61 (11.77)

1e-004


GTTTTGAT

as1/ocs/TGA-like

Groups D, I, S

58 (12.33)

8e-004


GTGATGTG

as1/ocs/TGA-like

Groups D, I, S

53 (12.23)

5e-005


G3TGAC(a/g)A

as1/ocs/TGA-like

Groups D, I, S

52 (11.99)

5e-004


C91

CTCCTCCT

ABRE-like

Group-A

58 (14.14)

9e-004


CGCCGTTC

Vs1-like

Groups D, I, S

53 (11.37)

2e-004


AGATGATG

as1/ocs/TGA-like

Groups D, I, S

50 (12.98)

1e-004


AATTTATG

as1/ocs/TGA-like

Groups D, I, S

50 (12.90)

2e-004


C90A

AATTTGAT

as1/ocs/TGA-like*

Groups D, I, S

56 (12.80)

1e-004


CGTGGTGT

ABRE-like

Groups D, I, S

51 (11.80)

5e-005


C88A

GGCGGGAG

ABRE-like

Groups D, I, S

53 (12.47)

8e-004


GGCGGGAG

ABRE-like

Groups D, I, S

53 (12.47)

8e-004


TCTTCTCTCT

CAMTA3

bZIP

50 (14.80)

5e-004


GAAAATGA

as1/ocs/TGA-like

Groups D, I, S

50 (12.74)

4e-004


C86

AAACCACA

ABRE-like

Groups D, I, S

69 (11.25)

2e-004


CAAAAACA

ABRE-like

Groups D, I, S

68 (12.03)

2e-004


GGCCATCG

as1/ocs/TGA-like

Groups D, I, S

68 (11.35)

2e-004


AGCGAGAG

ABRE-like

Group-A

61 (11.84)

5e-004


TACACCAT

ABRE-like

Group-A

60 (11.47)

2e-004


GAACGATG

ABRE-like

Group-A

57 (11.22)

2e-004


TCCTCTTCT

CAMTA3/ABRE-like

Groups D, I, S

51 (13.37)

9e-004


TATATGTA

ABRE-like

Group-A

51 (13.35)

2e-003


CAAATTGA

as1/ocs/TGA-like*

Groups D, I, S

50 (12.54)

5e-004


C87A

GCGAGGAA

ABRE-like

Group-A

63 (11.21)

2e-004


AGCAAACAA

ABRE-like

Group-A

51 (13.37)

2e-004


ACAACGAC

ABRE-like

Group-A

50 (11.91)

2e-004


C86A

CGGTGGCG

ABRE-like

Group-A

70 (12.13)

4e-004


TGAAGATG

as1/ocs/TGA-like

Groups D, I, S

53 (12.24)

1e-003


GCTGATTT

as1/ocs/TGA-like

Groups D, I, S

51 (11.92)

5e-004


C83

CTCGCCGC

ABRE-like

Group-A

65 (13.24)

7e-004


AAATTTGA

as1/ocs/TGA-like*

Groups D, I, S

63 (12.68)

6e-004


C(c/t)GAGCTC

as1/ocs/TGA-like

Groups D, I, S

57 (11.44)

5e-004


C83A

AATTTGAT

as1/ocs/TGA-like*

Groups D, I, S

70 (12.72)

2e-004


GGCTC(a/g)A(a/c/g)

as1/ocs/TGA-like*

Groups D, I, S

65 (11.06)

6e-004


AATTTTGA

as1/ocs/TGA-like*

Groups D, I, S

61 (12.86)

7e-004


(a/t)GAAATTG

as1/ocs/TGA-like*

Groups D, I, S

53 (11.85)

4e-004


TCGCCGTC

ABRE-like

Group-A

51 (13.06)

2e-004


TCTGA(a/t)CA

as1/ocs/TGA-like*

Groups D, I, S

51 (11.80)

7e-004


GAG(a/g)CGAA

as1/ocs/TGA-like*

Groups D, I, S

51 (13.00)

1e-004


CCACCCAA

ABRE-like

Group-A

51 (12.44)

7e-004


C81

AGGAGA(a/g)G

as1/ocs/TGA-like

Groups D, I, S

61 (13.03)

1e-004


GGCCGTG(c/g)

ABRE-like

Group-A

52 (12.65)

2e-004


C79

CGTGGTGT

ABRE-like

Group-A

65 (11.60)

5e-004


GAAAATGA

as1/ocs/TGA-like

Groups D, I, S

53 (12.04)

2e-004


ATAATTTGA

as1/ocs/TGA-like

Groups D, I, S

53 (13.74)

9e-004


ATGTACATTT

as1/ocs/TGA-like

Groups D, I, S

52 (12.82

2e-004


ATCATGCA

ABRE-like

Group-A

51 (12.69)

4e-004


C78

CTCCTCCT

ABRE-like

Group-A

65 (14.12)

1e-003


AAATTGATT

as1/ocs/TGA-like*

Groups D, I, S

53 (14.12)

3e-004


aHomology with motifs identified in other plant species (TRANSFAC, PLACE and AGRIS databases).

bPossible classes of associated bZIP proteins based on recent phylogenetic classification [29] and co-expression.

cPercent occurrence in critical promoters relative to background sequences (Total Information Content).

*Also similar to W-box (WRKY) motifs.

Yun et al. BMC Plant Biology 2010 10:16   doi:10.1186/1471-2229-10-16

Open Data