Table 1

An example of the syntax for describing the logical operations of the mammalian cell cycle network
Product Node Syntax
CycD $node[1] $node[1] = $node[1];
Rb $node[2] $node[2] = (!($node[1]) & !($node[4]) & !($node[5]) & !($node[10])) | ($node[6] & !($node[1]) & !($node[10]));
E2F $node[3] $node[3] = (!($node[2]) & !($node[5]) & !($node[10])) | ($node[6] & !($node[2]) & !($node[10]));
CycE $node[4] $node[4] = ($node[3] & !($node[2]));
CycA $node[5] $node[5] = ($node[3] & !($node[2]) & !($node[7]) & !($node[8] & $node[9])) | ($node[5] & !($node[2]) & !($node[7]) & !($node[8] & $node[9]));
p27 $node[6] $node[6] = (!($node[1]) & !($node[4]) & !($node[5]) & !($node[10])) |($node[6] & !($node[4] & $node[5]) & !($node[10]) & !($node[1]));
CDC20 $node[7] $node[7] = $node[10];
CDH1 $node[8] $node[8] = (!($node[5]) & !($node[10])) |$node[7] |($node[6] & !($node[10]));
UbcH10 $node[9] $node[9] = !($node[8]) |($node[8] & $node[9] & ($node[7] | $node[5] | $node[10]));
CycB $node[10] $node[10] = (!($node[7]) & !($node[8]));

*!,&, | represents NOT, AND, OR logic gate.

Vasaikar et al.

Vasaikar et al. BMC Neuroscience 2013 14:3   doi:10.1186/1471-2202-14-3

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