Table 3

Qualitative listing of PWM predictions compiled from CYP19 and HSD17B4 genes.

CYP19

HSD17B4

CYP19

HSD17B4

CYP19

HSD17B4

CYP19

HSD17B4


Ar

NFYA

Arnt

NHLH1

Arnt-Ahr

Nkx2-5

Bapx1

NKX3-1

cEBP

Nobox

CREB1

NR1H2-RXR

Ddit3-Cebpa

NR2F1

E2F1

NR3C1

ELF5

Pax2

ELK1

Pax4

En1

Pax5

ESR1

Pax6

ETS1

Pbx

Evi1

Pdx1

Fos

PPARG

Foxa2

PPARG-RXRA

FOXC1

Prrx2

Foxd3

REL

FOXF2

RELA

FOXI1

REST

FOXL1

Roaz

Foxq1

RORA_1

GABPA

RORA_2

Gata1

RORA1

GATA2

RREB1

GATA3

RUNX1

Gfi

RUSH1-alfa

HAND1-TCF3

RXRA-VDR

HLF

RXR-VDR

HNF1A

Sox17

HNF4

Sox5

Hox11-CTF1

SOX9

IRF1

SP1

IRF2

SPI1

Klf4

SPIB

Lhx3

Spz1

MafB

SRF

MAX

SRY

MEF2A

Staf

MIZF

STAT1

Myb

T

MYC-MAX

TAL1-TCF3

Mycn

TBP

Myf

TCF1

MZF1_1-4

TEAD

MZF1_5-13

TFAP2A

NFIL3

TP53

NF-kappaB

USF1

NFKB1

YY1

NF-Y

ZEB1

ZNF42_1-4


All 101 JASPAR predictions mapped onto the zebra finch genome assembly are listed. Blocks in the row denote the presence of the PWM either in the 5'-focused region (filled in blocks) or across the entire gene territory (open blocks) for CYP19 and HSD17B4.

London and Clayton BMC Neuroscience 2010 11:46   doi:10.1186/1471-2202-11-46

Open Data