Table 1

Summary of steroid-related genes identified in the zebra finch genome assembly.

Ensembl model ID

Chromosomal location

Alternate location


StAR

ENSTGUG00000004778

chr22:2,790,291-2,803,402

TSPO

ENSTGUG00000012033

chr1A:64,600,558-64,604,825

CYP11A1

ENSTGUG00000016385

chrUn:111,323,270-111,327,067

HSD3B1

ENSTGUG00000013351

chr1:90,752,924-90,765,922

HSD3B7

ENSTGUG00000004368

chr19:4700526-4724260

CYP17

ENSTGUG00000010219

chr6:22,934,143-22,936,206

HSD17B1

ENSTGUG00000002682

chr27:2,575,793-2,577,330

HSD17B2

ENSTGUG00000004388

chr11:2,151,325-2,156,358

chrUn:30,861,771-30,869,026

HSD17B3

chrZ:9,425,091-9,449,191

HSD17B4

ENSTGUG00000001154

chrZ:24,424,040-24,517,666

HSD17B6

chrUn:44,543,014-44,547,896

HSD17B7

ENSTGUG00000017081

chr8_random:518,775-526,426

HSD17B10

ENSTGUG00000015458

chrUn:14,031,915-14,032,480

HSD17B11

ENSTGUG00000002260

chr4:8,273,553-8,281,927

HSD17B12

ENSTGUG00000010212

chr5:19,883,132-19,948,030

CYP19

ENSTGUG00000006993

chr10:9,056,446-9,074,753

promoter 1a

chr10:9,078,023-9,078,512

promoter 1b

chr10:9,052,768-9,083,661

chrUn:18,857,683-18,860,112

ERα

ENSTGUG00000011249

chr3:56,288,003-56,500,000

ERβ

ENSTGUG00000012942

chr5:54,900,184-54,948,467

PR

ENSTGUG00000012778

chr1:77374938-77451302

AR

ENSTGUG00000002760

chr4A: 6,416,086-6,447,982


Genomic information for all twenty genes examined. Ensembl gene identifiers are listed for the eighteen genes with official models (HSD17B3 and HSD17B6 do not have Ensembl gene models). Chromosomal positions are also listed, as are the locations of either alternative mappings (HSD17B2) or annotated promoter regions (CYP19).

London and Clayton BMC Neuroscience 2010 11:46   doi:10.1186/1471-2202-11-46

Open Data