Table 1

Predicted highly expressed non-translated E. coli genes by the position preference measure.

Gene

bnumber

Type

Gene expression rank

PP

Gene

bnumber

Type

Gene expression rank

PP



asnT

b1977

tRNA

122

0.1076

leuP

b4369

tRNA

404

0.1294

asnW

b1984

tRNA

121

0.1076

selC

b3658

tRNA

617

0.1295

asnU

b1986

tRNA

101

0.1076

thrT

b3979

tRNA

143

0.1300

asnV

b1989

tRNA

127

0.1076

serW

b0883

tRNA

196

0.1310

thrV

b3273

tRNA

898

0.1154

rrsH

b0201

Ribosomal and stable RNAs

15

0.1318

valW

b1666

tRNA

1544

0.1172

rrsA

b3851

Ribosomal and stable RNAs

1

0.1318

valT

b0744

tRNA

114

0.1212

tyrU

b3977

tRNA

172

0.1318

valZ

b0746

tRNA

130

0.1212

rrsG

b2591

Ribosomal and stable RNAs

6

0.1319

valX

b2402

tRNA

124

0.1212

rrsC

b3756

Ribosomal and stable RNAs

2

0.1320

valY

b2403

tRNA

109

0.1212

rnpB

b3123

misc_RNA

73

0.1332

aspU

b0206

tRNA

219

0.1215

leuZ

b1909

tRNA

920

0.1338

aspV

b0216

tRNA

233

0.1215

rrfF

b3272

Ribosomal and stable RNAs

14

0.1338

aspT

b3760

tRNA

150

0.1215

rrlH

b0204

Ribosomal and stable RNAs

4

0.1348

serU

b1975

tRNA

1420

0.1221

metU

b0666

tRNA

309

0.1351

leuU

b3174

tRNA

3814

0.1229

metT

b0673

tRNA

229

0.1351

valV

b1665

tRNA

2022

0.1233

rrlA

b3854

Ribosomal and stable RNAs

12

0.1351

thrU

b3976

tRNA

66

0.1235

rrlC

b3758

Ribosomal and stable RNAs

18

0.1352

ileU

b3277

tRNA

274

0.1239

rrlE

b4009

Ribosomal and stable RNAs

5

0.1352

ileT

b3852

tRNA

236

0.1239

rrlG

b2589

Ribosomal and stable RNAs

3

0.1354

argQ

b2691

tRNA

455

0.1241

rrlD

b3275

Ribosomal and stable RNAs

30

0.1355

argZ

b2692

tRNA

765

0.1241

lysT

b0743

tRNA

123

0.1357

argV

b2694

tRNA

401

0.1241

lysW

b0745

tRNA

142

0.1357

ffs

b0455

misc_RNA

686

0.1255

lysY

b0747

tRNA

94

0.1357

trpT

b3761

tRNA

1483

0.1276

lysZ

b0748

tRNA

131

0.1357

pheV

b2967

tRNA

3047

0.1285

lysQ

b0749

tRNA

113

0.1357

pheU

b4134

tRNA

1995

0.1285

dicF

b1574

RNA; Cell division

3004

0.1361

leuT

b3798

tRNA

171

0.1287

proK

b3545

tRNA

3076

0.1367

leuQ

b4370

tRNA

502

0.1287


These 55 non-translated genes are among the 10% genes with lowest PP values (listed from lowest to highest PP values). The 39 genes highlighted in bold are also found to be highly expressed according to microarray gene expression levels and their rank are shown according to the measured microarray gene expression level (from highest to lowest, low rank => highly expressed).

Willenbrock and Ussery BMC Molecular Biology 2007 8:11   doi:10.1186/1471-2199-8-11

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