Table 2 |
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|
PCR primers used in this study. |
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|
mRNA |
mRNA name |
GenBank accession no. |
Forward primer1 |
Reverse primer1 |
Amplicon Size [bp] |
PCR efficiency [%] |
|
|
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|
ABL1 |
c-abl oncogene 1 |
GAGCACAGAGACACCACTGACG |
GCTCATCTTCATTCAGGCCG |
148 |
100.9 |
|
|
ACTB |
β-actin |
ATTGCCGACAGGATGCAGAA |
GCTGATCCACATCTGCTGGAA |
150 |
97.9 |
|
|
B2M |
β-2-microglobulin |
GCTCCGTGGCCTTAGCTGT |
ACGTGAGTAAACCTGAATCTTTGGA |
89 |
101.1 |
|
|
CD36 |
CD36 |
NM_001001548.2, NM_001001547.2, NM_000072.3, NM_001127443.1, NM_001127444.1 |
TCACTGCGACATGATTAATGGTACA |
ACGTCGGATTCAAATACAGCATAGAT |
126 |
99.2 |
|
EIF2B2 |
Eukaryotic translation initiation factor 2B2 |
TCCACCCCACTCATCGTCTG |
TGGCAGGACTTCTTCAGGAGC |
105 |
101.1 |
|
|
G6PD |
Glucose-6-phosphate dehydrogenase |
CCGTCACCAAGAACATTCACG |
GGACAGCCGGTCAGAGCTCT |
107 |
98.7 |
|
|
GAPDH |
Glyceraldehyde-3-phosphate dehydrogenase |
CAACAGCGACACCCACTCCT |
CACCCTGTTGCTGTAGCCAAA |
115 |
101.7 |
|
|
GUSB |
β-glucuronidase |
AGCTCATTTGGAATTTTGCCG |
GAGTGAAGATCCCCTTTTTATTCCC |
81 |
101.8 |
|
|
H3F3A |
H3 histone, family 3A |
TGGCGCTCCGTGAAATTAGA |
TGAGCAATTTCTCGCACCAGA |
91 |
97.0 |
|
|
POLR2K |
Polymerase (RNA) II (DNA-directed) polypeptide K |
ACCCAGAAGGACGTTCAACCTC |
TCTCTGCATCTGATTGGATCCC |
107 |
98.9 |
|
|
PPARA |
Peroxisome proliferator-activated receptor α |
AGCCCCTCCTCGGTGACTTAT |
GCTTGAGTCGAATCGTTCGC |
172 |
94.6 |
|
|
PPARD |
Peroxisome proliferator-activated receptor δ |
AGAACCGCAACAAGTGCCAG |
GCATCCGACCAAAACGGA |
87 |
99.1 |
|
|
PPARG |
Peroxisome proliferator-activated receptor γ |
TTCAGAAATGCCTTGCAGTGG |
AGCTTCTCCTTCTCGGCCTG |
79 |
100.6 |
|
|
PPIB |
Peptidylprolyl isomerase B (cyclophilin B) |
ATGGCAAGCATGTGGTGTTTG |
CCCGGCTGTCTGTCTTGGT |
84 |
96.8 |
|
|
PSMB2 |
Proteasome subunit, β type 2 |
ACGGCAGCAGCTAACTTCACA |
TGGCCCTTCATGCTCATCA |
108 |
101.9 |
|
|
PSMB6 |
Proteasome subunit, β type 6 |
GGAATCATCATCGCAGGCTG |
CTGCCTTACCATCATACCCCC |
81 |
101.6 |
|
|
QARS |
Glutaminyl-tRNA synthetase |
GAGCGTCTTGGATATTTCTCCGT |
GCTTCCAGCTCACACCTTTCC |
108 |
98.3 |
|
|
RPL37A |
Ribosomal protein L37a |
ATTGAAATCAGCCAGCACGC |
AGGAACCACAGTGCCAGATCC |
94 |
97.6 |
|
|
SRP14 |
Signal recognition particle 14 kDa |
AGCACTGTGGTGAGCTCCAAG |
TCAGCCCATCCATGTTAGCTCTA |
82 |
95.1 |
|
|
TUBA1 |
α1-tubulin |
GCACTACACCATTGGCAAGGA |
AACCAGTTCCCCCACCAAAG |
122 |
98.4 |
|
|
TXNRD1 |
Thioredoxin reductase 1 |
NM_003330.2, NM_182742.1, NM_182729.1, NM_182743.1, NM_001093771.1 |
CACAATTGGAATCCACCCTGTC |
GCTTGCCCCAGAGCGC |
73 |
99.2 |
|
UBE2D2 |
Ubiquitin-conjugating enzyme E2D 2 |
CCAGATGATCCTTTAGTGCCTGAG |
ACATCGCATACTTCTGAGTCCATTC |
100 |
102.5 |
|
|
|
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|
1In each case, forward and reverse primers are located in different exons. |
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|
Maeß et al. BMC Molecular Biology 2010 11:90 doi:10.1186/1471-2199-11-90 |
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