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Open Access Research article

Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5

Dmitri V Mavrodi1*, Joyce E Loper2, Ian T Paulsen3 and Linda S Thomashow4

Author Affiliations

1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, USA

2 USDA-ARS Horticultural Crops Research Laboratory, 3420 N. W. Orchard Ave, Corvallis, OR 97330, USA

3 Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW, 2109, Australia

4 USDA-ARS Root Disease and Biocontrol Research Unit, Washington State University, Pullman, WA 99164-6430, USA

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BMC Microbiology 2009, 9:8  doi:10.1186/1471-2180-9-8

Published: 13 January 2009

Additional files

Additional file 1:

Sequence analysis of prophage 01 of P. fluorescens Pf-5. Table containing annotation of mobile genetic element prophage 01 in the genome of Pseudomonas fluorescens Pf-5. The following information is provided for each open reading frame: locus tag number, gene name, genome coordinates, length and molecular weight of encoded protein, sequence of putative ribosome binding site, description of the closest GenBank match plus blast E-value, list of functional domains and predicted function.

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Open Data

Additional file 2:

Sequence analysis of prophage 01 of P. fluorescens Q8r1-96. Table containing annotation of mobile genetic element prophage 01 in the genome of Pseudomonas fluorescens Q8r1-96. The following information is provided for each open reading frame: locus tag number, gene name, genome coordinates, length and molecular weight of encoded protein, sequence of putative ribosome binding site, description of the closest GenBank match plus blast E-value, list of functional domains and predicted function.

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Open Data

Additional file 3:

Sequence analysis of prophage 03 of P. fluorescens Pf-5. Table containing annotation of mobile genetic element prophage 03 in the genome of Pseudomonas fluorescens Pf-5. The following information is provided for each open reading frame: locus tag number, gene name, genome coordinates, length and molecular weight of encoded protein, sequence of putative ribosome binding site, description of the closest GenBank match plus blast E-value, list of functional domains and predicted function.

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Open Data

Additional file 4:

Sequence analysis of prophage 06 of P. fluorescens Pf-5. Table containing annotation of mobile genetic element prophage 06 in the genome of Pseudomonas fluorescens Pf-5. The following information is provided for each open reading frame: locus tag number, gene name, genome coordinates, length and molecular weight of encoded protein, sequence of putative ribosome binding site, description of the closest GenBank match plus blast E-value, list of functional domains and predicted function.

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Open Data

Additional file 5:

Sequence analysis of putative integrase genes from P. fluorescens Pf-5. Table containing annotation of putative integrase genes present in the genome of Pseudomonas fluorescens Pf-5. The following information is provided for each open reading frame: locus tag number, gene name, genome coordinates, length and molecular weight of encoded protein, sequence of putative ribosome binding site, description of the closest GenBank match plus blast E-value, list of functional domains and predicted function.

Format: PDF Size: 29KB Download file

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Open Data

Additional file 6:

Sequence analysis of prophage 02 of P. fluorescens Pf-5. Table containing annotation of mobile genetic element prophage 02 in the genome of Pseudomonas fluorescens Pf-5. The following information is provided for each open reading frame: locus tag number, gene name, genome coordinates, length and molecular weight of encoded protein, sequence of putative ribosome binding site, description of the closest GenBank match plus blast E-value, list of functional domains and predicted function.

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Open Data

Additional file 7:

Sequence analysis of prophage 04 of P. fluorescens Pf-5. Table containing annotation of mobile genetic element prophage 04 in the genome of Pseudomonas fluorescens Pf-5. The following information is provided for each open reading frame: locus tag number, gene name, genome coordinates, length and molecular weight of encoded protein, sequence of putative ribosome binding site, description of the closest GenBank match plus blast E-value, list of functional domains and predicted function.

Format: PDF Size: 35KB Download file

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Open Data

Additional file 8:

Sequence analysis of prophage 05 of P. fluorescens Pf-5. Table containing annotation of mobile genetic element prophage 05 in the genome of Pseudomonas fluorescens Pf-5. The following information is provided for each open reading frame: locus tag number, gene name, genome coordinates, length and molecular weight of encoded protein, sequence of putative ribosome binding site, description of the closest GenBank match plus blast E-value, list of functional domains and predicted function.

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Open Data

Additional file 9:

Sequence analysis of island 01 of P. fluorescens Pf-5. Table containing annotation of mobile genetic element island 01 in the genome of Pseudomonas fluorescens Pf-5. The following information is provided for each open reading frame: locus tag number, gene name, genome coordinates, length and molecular weight of encoded protein, sequence of putative ribosome binding site, description of the closest GenBank match plus blast E-value, list of functional domains and predicted function.

Format: PDF Size: 145KB Download file

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Open Data

Additional file 10:

Sequence analysis of island 02 of P. fluorescens Pf-5. Table containing annotation of mobile genetic element island 02 in the genome of Pseudomonas fluorescens Pf-5. The following information is provided for each open reading frame: locus tag number, gene name, genome coordinates, length and molecular weight of encoded protein, sequence of putative ribosome binding site, description of the closest GenBank match plus blast E-value, list of functional domains and predicted function.

Format: PDF Size: 33KB Download file

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Open Data