Table 7 |
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|
Genetic heterogeneity in the SS14 population isolated from rabbit testes |
||||||
|
ORFa |
Genome positiona |
[GenBank:AE000520] sequence |
SS14 sequenceb |
position in ORF (Nichols) a |
aa change |
note |
|
|
||||||
|
TP0117 |
135098 |
G |
G or C (5/6) |
1600 |
P534 => A534 |
|
|
135107 |
T |
T or C (3/4) |
1591 |
I531 => V531 |
||
|
135141 |
G |
G or A (5/2) |
1557 |
no change |
||
|
135144 |
T |
T or C (3/4) |
1554 |
no change |
||
|
135149 |
C |
C or T (5/2) |
1549 |
A517 => T517 |
||
|
135220 |
G |
G or A (5/6) |
1478 |
T493 => I493 |
||
|
135227 |
G |
G or A (6/6) |
1471 |
P491 => S491 |
||
|
135235 |
G |
G or A (2/10) |
1463 |
A488 => V488 |
||
|
135239 |
C |
C or T (2/10) |
1459 |
G487 => R487 |
||
|
135251 |
A |
A or G (6/6) |
1447 |
Y483 => H483 |
||
|
|
||||||
|
TP0402 |
427435 |
C |
C or T (NA) |
401 |
P134 => L134 |
|
|
427737 |
G |
G or T (NA) |
703 |
A235 => S234 |
||
|
|
||||||
|
TP0620 |
671746 |
T |
T or C (9/3) |
1142 |
Q381 => R381 |
|
|
671751 |
T |
T or G (19/10) |
1137 |
R379 => G379 |
||
|
671753 |
T |
T or C (19/10) |
1135 |
R379 => G379 |
||
|
671763 |
C |
C or T (8/4) |
1125 |
no change |
||
|
671982 |
G |
G or C (12/6) |
906 |
S302 => R302 |
||
|
672004 |
C |
C or T (12/6) |
884 |
S295 => N295 |
||
|
672016 |
A |
G or A (12/6) |
872 |
L291 => P291 |
||
|
672025 |
T |
T or C (11/7) |
863 |
N288 => C288 |
||
|
672026 |
T |
T or A (11/6) |
862 |
N288 => C288 |
||
|
672027 |
A |
A or G (11/6) |
861 |
G287 => D287 |
||
|
672028 |
C |
C or T (12/5) |
860 |
G287 => D287 |
||
|
672036 |
G |
G or T (11/6) |
852 |
no change |
||
|
672039 |
A |
A or G (NA) |
849 |
P283 => N283 |
||
|
672040 |
G |
G or T (NA) |
848 |
P283 => N283 |
||
|
672041 |
G |
G or T (12/6) |
847 |
P283 => N283 |
||
|
672042 |
G |
G or A (NA) |
846 |
D282 => S282 |
||
|
672043 |
T |
T or C (13/6) |
845 |
D282 => S282 |
||
|
672044 |
C |
C or T (10/5) |
844 |
D282 => S282 |
||
|
672154 |
G |
G or T (7/10) |
734 |
T245 => K245 |
||
|
672286 |
G |
G or A (4/12) |
602 |
T201 => M201 |
||
|
|
||||||
|
Upstream of TP0620 |
672916-7 |
(-) |
(-) or C (6/6) |
position -30 from TP0620 |
homopolymeric stretch |
|
|
672944 |
A |
A or G (14/6) |
position -58 from TP0620 |
|||
|
|
||||||
|
TP0621 |
673088 |
T |
T or C (14/4) |
2134 |
I712 => V712 |
|
|
673119 |
G |
G or A (14/4) |
2103 |
no change |
||
|
673425 |
C |
C or T (2/8) |
1797 |
no change |
||
|
673428 |
A |
A or G (2/8) |
1794 |
no change |
||
|
673511 |
A |
A or C (6/6) |
1711 |
F571 => V571 |
||
|
673545 |
C |
C or T (9/4) |
1677 |
no change |
||
|
673550 |
A |
A or G (10/6) |
1672 |
F558 => L558 |
||
|
673554 |
C |
C or T (10/6) |
1668 |
no change |
||
|
|
||||||
|
TP0971 |
1054447 |
T |
T or C (NA) |
301 |
K101 => E101 |
|
|
|
||||||
|
TP1029 |
1123796 |
G |
G or A (5/6) |
15 |
no change |
|
|
|
||||||
|
ORF – open reading frame; aa – amino acid; NA – not available; aas described in [3]; bnumbers in parentheses show sequence reads for each alternative sequence. |
||||||
|
Matějková et al. BMC Microbiology 2008 8:76 doi:10.1186/1471-2180-8-76 |
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