|
DDT sequencing of regions selected based on pilot SS14/Nichols comparison using microarray hybridization experiments |
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| Region no. |
ORFa |
Size of sequenced region (nt) |
Left coordinatea |
Right coordinatea |
Newly found changes |
Confirmation of SNPs identified by CGSb |
|
|
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| 1 |
TP0017 |
848 |
18454 |
19301 |
- |
- |
| 2 |
TP0070 |
339 |
75493 |
75831 |
- |
- |
| 3 |
TP0094 |
1011 |
102879 |
103889 |
- |
- |
| 4 |
TP0123 |
1083 |
143207 |
144289 |
- |
- |
| 5 |
TP0192 |
748 |
206663 |
207410 |
- |
- |
| 6 |
TP0200 |
264 |
210183 |
210446 |
- |
- |
| 7 |
TP0291 |
834 |
304706 |
305539 |
- |
- |
| 8 |
TP0319 |
1014 |
334847 |
335860 |
- |
1 SNP |
| 9 |
TP0321–TP0322 |
2640 |
336149 |
338788 |
- |
- |
| 10 |
TP0323 |
851 |
338885 |
339735 |
- |
1 SNP |
| 11 |
TP0376 |
806 |
400903 |
401708 |
- |
- |
| 12 |
TP0377 |
78 |
401851 |
401928 |
- |
- |
| 13 |
TP0516 |
1533 |
556351 |
557883 |
- |
- |
| 14 |
TP0519 |
1277 |
559215 |
560491 |
- |
- |
| 15 |
TP0580 |
1242 |
630328 |
631569 |
- |
- |
| 16 |
TP0587 |
183 |
639620 |
639802 |
- |
- |
| 17 |
TP0633 |
776 |
691437 |
692212 |
- |
- |
| 18 |
TP0683 |
1047 |
746899 |
747945 |
- |
- |
| 19 |
TP0799–TP0800 |
2168 |
866136 |
868303 |
- |
- |
| 20 |
TP0806 |
1397 |
875808 |
877204 |
- |
- |
| 21 |
TP0807 |
165 |
877407 |
877571 |
- |
- |
| 22 |
TP0808 |
187 |
877632 |
877818 |
- |
- |
| 23 |
TP0877 |
998 |
953710 |
954707 |
- |
2 SNPs |
| 24 |
TP0933 |
2023 |
1013098 |
1015120 |
- |
- |
| 25 |
TP0952 |
1438 |
1032341 |
1033778 |
- |
1 SNP |
| 26 |
TP0961 |
1216 |
1041973 |
1043188 |
- |
- |
| 27 |
TP0980 |
975 |
1063047 |
1064021 |
- |
- |
|
ORF – open reading frame; nt – nucleotide; SNP – single nucleotide polymorphism; aas described in [3]; bSNPs identified using CGS in these regions were verified by DDT sequencing. | ||||||
Matějková et al. BMC Microbiology 2008 8:76 doi:10.1186/1471-2180-8-76 |
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