Table 4 |
||||
|
Genotyping of C. psittaci field strains using the AT microarray and comparison with PCR-RFLP and ompA sequencing |
||||
|
Strain ID |
Origin |
Genotype identification by |
||
|
|
||||
|
PCR-RFLP |
ompA sequencing |
ArrayTube genotyping* |
||
|
|
||||
|
C1/97 |
sheep, Germany, 1997 |
C |
C |
C |
|
C5/98 |
calf, Germany, 1998 |
A |
A |
A-6BC |
|
C19/98 |
sheep, Germany, 1998 |
A |
A |
A-6BC |
|
DC15 |
cattle, Germany, 2001 |
A |
A |
A-6BC |
|
DC28 |
amazon parrot, Germany, 2001 |
A |
A |
A-VS1 |
|
DC29 |
amazon parrot, Germany, 2001 |
A |
A |
A-6BC |
|
DC32 |
pigeon, Germany, 2001 |
B |
B |
B |
|
Cal-10 |
ferret, USA, 1936 |
E |
E |
E |
|
St04 |
chicken, Germany, 2005 |
A |
A |
A-VS1 |
|
St05 |
duck, Germany, 2005 |
E |
E/B |
EB-E30 |
|
St06 |
duck, Germany, 2005 |
A |
A |
A-VS1 |
|
St07 |
duck, Germany, 2005 |
E |
E/B |
EB-E30 |
|
|
||||
|
* AT hybridization signal pattern assigned according to Table 3 |
||||
|
Sachse et al. BMC Microbiology 2008 8:63 doi:10.1186/1471-2180-8-63 |
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