Table 5

Identities of variable region V3 DGGE bands picked and sequenced from the gel in Figure 6B

DGGE band number

Closest relative (if known)

Origin and accession number

Sequence homology (%)


1

Barnesiella intestinihominis

Human faeces [GenBank:AB370251]

100


2

Uncultured bacterial clone

Adult human faeces [GenBank:AY983922]

100


3

Bacteroides dorei

Human faeces [GenBank:AB242142]

100


4

Uncultured Bacteroides clone

Human faeces [GenBank:EU381174]

100


5

Bacteroides fragilis

No origin given [GenBank:CR626927]

100


6

Desulfovibrio spp.

No origin given [GenBank:U60095]

100


7

Uncultured bacterium clone

Human faeces [GenBank:DQ800759]

100


8

Uncultured faecal bacterium clone

Adult with Crohn's disease [GenBank:AY471705]

100


9

Uncultured bacterium clone

Human adult faecal sample [GenBank:AY985184]

100


10

Bacteroides vulgatus

Human large intestine [GenBank:AY978412]

99


11

Uncultured Bacteroides spp.

Human faeces [GenBank:DQ808592]

100


12

Bacteroides eggerthii

Human intestine [GenBank:AB050107]

100


13

Uncultured bacterial clone

Activated sludge in circulation flush toilet [GenBank:AB196029]

95


14

Prevotella spp.

Human oral clone [GenBank:AY005054]

92


15

Uncultured bacterial clone

Human faeces [GenBank:AY343236]

97


16

Bacteroides uniformis

Human faeces [GenBank:AB247142]

100


17

Bacteroides eggerthii

Human faeces [GenBank:AB050107]

100


Harrington et al. BMC Microbiology 2008 8:195   doi:10.1186/1471-2180-8-195

Open Data