Table 5 |
|||
|
Identities of variable region V3 DGGE bands picked and sequenced from the gel in Figure 6B |
|||
|
DGGE band number |
Closest relative (if known) |
Origin and accession number |
Sequence homology (%) |
|
|
|||
|
1 |
Barnesiella intestinihominis |
Human faeces [GenBank:AB370251] |
100 |
|
|
|||
|
2 |
Uncultured bacterial clone |
Adult human faeces [GenBank:AY983922] |
100 |
|
|
|||
|
3 |
Bacteroides dorei |
Human faeces [GenBank:AB242142] |
100 |
|
|
|||
|
4 |
Uncultured Bacteroides clone |
Human faeces [GenBank:EU381174] |
100 |
|
|
|||
|
5 |
Bacteroides fragilis |
No origin given [GenBank:CR626927] |
100 |
|
|
|||
|
6 |
Desulfovibrio spp. |
No origin given [GenBank:U60095] |
100 |
|
|
|||
|
7 |
Uncultured bacterium clone |
Human faeces [GenBank:DQ800759] |
100 |
|
|
|||
|
8 |
Uncultured faecal bacterium clone |
Adult with Crohn's disease [GenBank:AY471705] |
100 |
|
|
|||
|
9 |
Uncultured bacterium clone |
Human adult faecal sample [GenBank:AY985184] |
100 |
|
|
|||
|
10 |
Bacteroides vulgatus |
Human large intestine [GenBank:AY978412] |
99 |
|
|
|||
|
11 |
Uncultured Bacteroides spp. |
Human faeces [GenBank:DQ808592] |
100 |
|
|
|||
|
12 |
Bacteroides eggerthii |
Human intestine [GenBank:AB050107] |
100 |
|
|
|||
|
13 |
Uncultured bacterial clone |
Activated sludge in circulation flush toilet [GenBank:AB196029] |
95 |
|
|
|||
|
14 |
Prevotella spp. |
Human oral clone [GenBank:AY005054] |
92 |
|
|
|||
|
15 |
Uncultured bacterial clone |
Human faeces [GenBank:AY343236] |
97 |
|
|
|||
|
16 |
Bacteroides uniformis |
Human faeces [GenBank:AB247142] |
100 |
|
|
|||
|
17 |
Bacteroides eggerthii |
Human faeces [GenBank:AB050107] |
100 |
|
|
|||
|
Harrington et al. BMC Microbiology 2008 8:195 doi:10.1186/1471-2180-8-195 |
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