Table 3

Microarray binding levels of selected 16–21-mer microarray probes from healthy individuals and a UC patient

Microarray Probe

Individual A

Individual B

Individual C

Disease

Remission


B. longum grp1*

+++

+

+

++++++

+++


B. longum grp2*

++++

+

+

+++

++


B. longum grp3*

++++++

++

+

++++++

++++++


B. bifidium*

++++++

+

+

+

+


B. thetaiotaomicron & B. ovatus

++++++

++++

++++++

+

+++++


B. ovatus

+

+

+

-

+


B. thetaiotaomicron

++

+

+++

-

-


B. vulgatus1

++++++

+++

++++

+

++++++


B. vulgatus2

+

+

+

-

-


B. putredinis1

++++++

+

+

+

++


B. putredinis2

++++

+

+

-

+


D. piger2

-

-

-

-

+


D. piger4

-

-

-

+

++


Enterobacteriaceae1*

++++

++++++

++++++

++

+


Enterobacteriaceae2

-

+

+

-

-


CclusterXIVab*

++++++

++++

++++++

++

++


C. coccoides

++++++

++++++

++++++

++++

++


C. clostridiformes1

+++

+

++

+

++


C. nexile

+

+

+

-

-


C. symbiosum

+

+

+

-

-


CclusterIV

++

+

+

+

-


C. leptum2*

+

+

+

+

+


C. butyricium

+

+

+

-

-


C. paraputrificum

+

-

+

-

-


ClusterIII

++++++

++++++

+++

++

+


E. cylindroides clust1

++++++

++++

++++

+

+


E. cylindroides clust2

++++++

+++++

+++++

+++

+


E. biforme3

+

+

+

++

+


E. biforme4

+

+

+

+

+


E. rectale1

++

+

+

++

+


E. rectale2

+++++

+

++

+++

+


R. lactaris

++++

+

+

+

+


R. torques

+

-

-

-

-


R. albus & R.flavefaciens1

++

+

+

-

-


R. albus & R. flavefaciens2

++++++

++++

++

++

+


R. callidus

+

+

++

-

-


R. bromii

++++++

++

+++

-

-


Verrucomicrobiales

++

++++++

++++++

-

-


Microarray binding levels of selected 16–21-mer microarray probes from three healthy individuals and a UC sufferer during active disease and remission phases.

Hybridisation intensities, converted into symbols are: no signal to 0.09, -; 0.10 to 0.99, +; 1.00 to 1.99, ++; 2.00 to 2.99, +++; 3.00 to 3.99, ++++; 4.00 to 4.99, +++++; 5.00 or greater, ++++++. Probes highlighted with a * indicate they were used for initial specificity testing.

Harrington et al. BMC Microbiology 2008 8:195   doi:10.1186/1471-2180-8-195

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