|
16S ribosomal gene primers used for PCR amplification or DGGE |
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| Primer |
Sequence (5'-3') |
Primer target sitea |
Reference |
|
|
|||
| Amp F |
GAGAGTTTGATYCTGGCTCAG |
0006 |
[13] |
|
|
|||
| Amp R |
AAGGAGGTGATCCARCCGCA |
1530 |
[13] |
|
|
|||
| InfL6b |
TATCGGGGAGCAAGCGAG |
0445 |
[53] |
|
|
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| Bif662-r |
CCACCGTTACACCGGGAA |
0662 |
[3] |
|
|
|||
| ENT183c |
CGTCGCAAGACCAAAGAG |
0183 |
[54] |
|
|
|||
| 424R |
CCGCTGAAAGTACTTTACAACC |
0424 |
This study |
|
|
|||
| F-968d |
GAACGCGAAGAACCTTAC |
0968 |
[55] |
|
|
|||
| R-1401 |
CGGTGTGTAGAAGACCC |
1401 |
[55] |
|
|
|||
| F-341d |
CCTACGGGAGGCAGCAG |
0341 |
[56] |
|
|
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| R-534 |
ATTACCGCGGCTGCTGG |
0534 |
[56] |
|
a Primer target site according to E. coli 16S ribosomal gene numbering as the reference. b This primer was known as B. longum grp3 for the microarray. c This primer was designated Enterobacteriaceae1 for the microarray. d A 39 nt GC clamp was added to the 5' end of the primer when used for DGGE. | |||
Harrington et al. BMC Microbiology 2008 8:195 doi:10.1186/1471-2180-8-195 |
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