Table 2

Core pH-dependent genes (both aerobic and oxygen-limited)1

Acid up-regulated

Base up-regulated


acnA

gatZ

rcsF

acfD

katG

tsx

apaG

gcd

rob

acrA

lamB

ubiB

argO

gdhA

rpoE

acrR

maa

uxuA

aspC

gloA

rseA

alx

malE

yahA

azoR

gnd

skp

artQ

malF

yahA

b1052

groS

sodB

atpA

malG

yajC

cadA

grxB

srlA

atpC

malK

ybjK

cdd

hdeA

srlB

atpF

malM

yccA

cfa

hdeB

srlD

atpH

malP

yceI

clpB

hsdR

srlE

b1172

malQ

ycfS

crcB

hybG

srlR

b3913

malT

yciC

cyaA

idi

tas

bdm

mdoD

ydcV

dadA

kdsA

tehB

borD

mltD

ydeH

dapB

kefB

tpiA

cpxA

mppA

yebE

deoA

lysA

uspD

cpxP

mutL

yeeI

deoB

lysC

wrbA

cpxR

nmpC

ygaH

deoC

lysU

yagU

cvpA

nrdD

ygaZ

deoD

mazG

yafE

dedA

nrdG

yghG

dhaK

mcrB

ybaK

dnaX

ompF

yghJ

dhaL

mdaB

ybhB

dsbA

ompT

ygiB

dhaM

mdtI

ybjN

fadL

osmB

ygiC

dpiA

mdtJ

ycfP

folP

pheA

yjdM

dps

menB

ychH

ftnB

pitA

yjfO

edd

menF

ydhM

fucR

pntA

yjhC

fbp

metK

ydiH

gcvT

potD

yjhR

fimA

metN

ydiZ

glk

ppiA

ymgD

fimI

mrp

yeaQ

glpF

pppA

ynfD

flgB

murI

yeiA

glpX

proV

flgC

nadC

yfiD

gpmM

purA

flgD

narG

ygdQ

hemY

purH

flgE

narH

yggE

hflK

purM

flgF

nemA

ygiN

hflX

rdoA

flgG

nhaB

ygiS

hisB

recA

fliA

npr

yhbJ

hisC

rnk

fliK

nupG

yheL

hisD

sdaA

fliL

pan E

yheN

hisF

sdaC

fre

pdxH

yheO

hisG

sdiA

galP

pdxK

yhhX

hisH

slt

gapC

pdxY

yieE

hisI

spy

gatA

pfkB

yieF

hisJ_

sulA

gatB

pgi

yieP

htpX

tatA

gatC

pps

yiiS

ilvG

tgt

gatD

rbsA

yjjU

ilvN

tnaB

gatR

rbsC

ykgA

insH

treB

gatY

rbsD

yqhD

ivbL

treC


Acid up-regulated (anaerobic)

Base up-regulated (aerobic)

Base up-regulated (anaerobic)

Acid up-regulated (aerobic)


cydA

nhaA

ybjH

aceE

hslJ

rfbC

cydB

pyrB

ydcH

aceF

icd

rfe

dsdX

rbsB

yehU

aceK

lgt

ribA

fdhF

tdcA

ygeW

add

lpxD

rplI

glgS

tdcB

yhaN

argZ

lysP

sdhA

hupA

tdcC

yjeJ

aspA

mltC

sdhB

lsrK

tdcD

yjgB

b0725

nfsA

sdhC

manX

torR

yjiY

cyoA

ndk

sdhD

manY

udp

yodD

cyoB

nuoA

sucA

manZ

uspF

yohK

cyoC

nuoB

sucB

narI

ybaT

yqjD

cyoD

nuoC

sucC

dnaJ

nuoE

sucD

dnaK

nuoF

thrC

fdoG

nuoG

tpx

fdoH

nuoH

wbbI

fimG

nuoI

yeaC

galF

nuoK

yebK

gltA

nuoL

yeiU

gpmA

oppC

yfdI

groL

oppD

yffB

guaB

oppF

yihG

hha

purU

ylaC

hsdS

rcsA

yqeG


1Genes were selected as "core pH-dependent" based on their significant differences in expression between acid and base growth conditions, both under oxygen limitation (this report) and under aeration [2].

Hayes et al. BMC Microbiology 2006 6:89   doi:10.1186/1471-2180-6-89

Open Data