Table 1 |
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|
Most represented protein domains in the Saprolegnia parasitica EST contigs |
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|
InterPro ID |
Description |
Number of contigs |
|
|
||
|
IPR000719 |
Eukaryotic protein kinase |
22 |
|
IPR004000 |
Actin and actin-like |
11 |
|
IPR001993 |
Mitochondrial energy transfer proteins (carrier protein) |
9 |
|
IPR000626 |
Ubiquitin domain |
6 |
|
IPR002110 |
Ankyrin-repeat |
5 |
|
IPR001680 |
G-protein beta WD-40 repeats |
5 |
|
IPR000795 |
GTP-binding elongation factor |
5 |
|
IPR001353 |
Multispecific proteasome proteases |
5 |
|
IPR003008 |
Tubulin/FtsZ family |
5 |
|
IPR000873 |
AMP-dependent synthetase and ligase |
4 |
|
IPR000254 |
Cellulose-binding domain, fungal type |
4 |
|
IPR002130 |
Cyclophilin-type peptidyl-prolyl cis-trans isomerase |
4 |
|
IPR002048 |
EF-hand |
4 |
|
IPR000173 |
Glyceraldehyde 3-phosphate dehydrogenase |
4 |
|
IPR000232 |
Heat shock factor (HSF)-type DNA-binding domain |
4 |
|
IPR001806 |
Ras GTPase superfamily |
4 |
|
IPR000504 |
RNA-binding region RNP-1 (RNA recognition motif) |
4 |
|
IPR001464 |
Annexin family |
3 |
|
IPR001623 |
DnaJ N-terminal domain |
3 |
|
IPR001753 |
Enoyl-CoA hydratase/isomerase |
3 |
|
IPR001179 |
FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase) |
3 |
|
IPR001005 |
Myb DNA binding domain |
3 |
|
IPR003014 |
PAN domain |
3 |
|
IPR000668 |
Papain cysteine protease (C1) family |
3 |
|
IPR001272 |
Phosphoenolpyruvate carboxykinase (ATP) |
3 |
|
IPR001849 |
Pleckstrin homology (PH) domain |
3 |
|
IPR001232 |
SKP1-like |
3 |
|
IPR000063 |
Thioredoxin |
3 |
|
IPR001440 |
TPR repeat |
3 |
|
|
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|
Torto-Alalibo et al. BMC Microbiology 2005 5:46 doi:10.1186/1471-2180-5-46 |
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