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Open Access Highly Accessed Research article

Shotgun metagenomic analysis of metabolic diversity and microbial community structure in experimental vernal pools subjected to nitrate pulse

Sarah R Carrino-Kyker12*, Kurt A Smemo13 and David J Burke12

Author Affiliations

1 The Holden Arboretum, Kirtland, OH, USA

2 Department of Biology, Case Western Reserve University, Cleveland, OH, USA

3 Department of Biological Sciences, Kent State University, Kent, OH, USA

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BMC Microbiology 2013, 13:78  doi:10.1186/1471-2180-13-78

Published: 10 April 2013

Additional files

Additional file 1: Tables S1-S4:

Results from Fisher exact tests at all subsystem levels and a chi-square test conducted at level two using the Statistical Analysis of Metagenomic Profiles program.

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Additional file 2: Tables S5-S6:

Nitrogen metabolism genes included in the database created from the NCBI site and all matches from the +NO3- metagenome to nitrogen metabolism genes with a BLASTN.

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