Table 3

Identity of bacteria isolated from peptides or amino acids enrichments
Isolate Vol/ diln Identification % Sim Phylum Class Order Accession no.
Peptides
1 O1/5 Clostridium perfringens 99 Firmicutes Clostridia Clostridiales GU968162
3 O1/5 Clostridium orbiscindens 99 Firmicutes Clostridia Clostridiales GU968163
5 O1/5 Shigella sonnei 98 Proteobacteria Gammaproteobacteria Enterobacteriales GU968164
6 O1/6 Enterococcus faecium 99 Firmicutes Bacilli Lactobacillales GU968165
8 O1/6 Bacteroides ovatus 99 Bacteroidetes Bacteroidia Bacteroidales GU968166
12 O2/5 C. orbiscindens 97 Firmicutes Clostridia Clostridiales 893 bp
13 O2/5 Clostridium innocuum 98 Firmicutes Clostridia Clostridiales GU968167
14 O2/5 B. ovatus 93 Bacteroidetes Bacteroidia Bacteroidales GU968168
15 O2/5 Blautia hydrogenotrophica 95 Firmicutes Clostridia Clostridiales GU968169
16 O2/6 C. orbiscindens 95 Firmicutes Clostridia Clostridiales 877 bp
17 O2/6 C. orbiscindens 99 Firmicutes Clostridia Clostridiales GU968170
21 V1/5 Bacteroides fragilis 99 Bacteroidetes Bacteroidia Bacteroidales GU968171
22 V1/5 Escherichia coli 99 Proteobacteria Gammaproteobacteria Enterobacteriales GU968172
23 V1/5 B. fragilis 98 Bacteroidetes Bacteroidia Bacteroidales GU968173
25 V1/6 B. fragilis 99 Bacteroidetes Bacteroidia Bacteroidales GU968174
27 V1/6 E. faecium 99 Firmicutes Bacilli Lactobacillales GU968175
Amino acids
29 O1/6 Shigella sp. 100 Proteobacteria Gammaproteobacteria Enterobacteriales GU968176
31 O1/6 Staphylococcus sp. 99 Firmicutes Bacilli Bacillales GU968177
33 O1/7 Shigella flexneri 98 Proteobacteria Gammaproteobacteria Enterobacteriales GU968178
34 O1/7 Eggerthella lenta 96 Actinobacteria Coriobacteridae Coriobacteriales GU968179
35 O1/7 S. flexneri 98 Proteobacteria Gammaproteobacteria Enterobacteriales GU968180
39 O2/6 Clostridium scindens 98 Firmicutes Clostridia Clostridiales GU968181
42 O2/7 Ruminococcus sp. 96 Firmicutes Clostridia Clostridiales One strand only
45 V1/5 E. coli 98 Proteobacteria Gammaproteobacteria Enterobacteriales GU968182
46 V1/5 E. coli 98 Proteobacteria Gammaproteobacteria Enterobacteriales GU968183
48 V1/5 E. coli 99 Proteobacteria Gammaproteobacteria Enterobacteriales GU968184
49 V1/5 E. coli 99 Proteobacteria Gammaproteobacteria Enterobacteriales GU968185
50 V1/6 E. coli 99 Proteobacteria Gammaproteobacteria Enterobacteriales 885 bp

Richardson et al.

Richardson et al. BMC Microbiology 2013 13:6   doi:10.1186/1471-2180-13-6

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