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Open Access Highly Accessed Research article

Clustering subspecies of Aeromonas salmonicida using IS630 typing

Nicole Studer, Joachim Frey* and Philippe Vanden Bergh

Author Affiliations

Institute of Veterinary Bacteriology, University of Bern, Länggassstrasse 122, Bern, Switzerland

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BMC Microbiology 2013, 13:36  doi:10.1186/1471-2180-13-36

Published: 13 February 2013

Additional files

Additional file 1: Table S1:

Table showing for each A. salmonicida A449 IS630 copy, the size of the XhoI-digested DNA fragment containing the IS, the inter- or intragenic localization, the characteristics of the adjacent genes, and the association to a region of variability or to other IS elements.

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Additional file 2: Table S2:

Profound analysis and comparison of published Aeromonas genomes used for Figures 3 and 4. Grey: conserved ORFs; light green: ORFs specific of the species; yellow: IS630; pink: other IS elements; red: putative or characterized virulence factors; mauve: ORFs for resistance to antibiotic or heavy metal; dark green: ORFs associated to pili, fimbriae or flagella; blue: ORFs associated to phage; cyan: tRNA and rRNA; orange: ORFs with homology to eukaryotic genes.

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Additional file 3: Table S3:

Detail of loci corresponding to transposons in Aeromonas sp.

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