Table 2

Open reading frames identified in each of the 5 drug resistance-conferring plasmids
Plasmid ORF Predicted protein length Most similar protein, Genbank accession number Organism E-value AA identity
pAMP 1 95 Putative Iron-Chelator Esterase EL859857.1 Bacillus Subtilis subsp inaquoaorm 7 e-55 99%
pAMP 2 230 Putative Sodium Dependent Transporter ZP_2118733.1 Bacillus Subtilis subsp inaquoaorm 2 e-156 98%
pAMP 3 378 Sugar Efflux Transporter YP_001907636.1 Erwinia tasmaniensis Et1/99 0.00 89%
pAMP 4 293 Extended Sepctrum Beta-lactamase ERP-1 AAAL86999.1 Erwinina perscina 2 e-152 81%
pAMP 5 303 Peptidyl-Dipeptidase YP_001907684.1 Erwinia tasmaniensis Et1/99 8 e-154 86%
pCIP 1 216 Pentapeptide-Repeat Containing Protein YP_006790167.1 Exiguobacterium antarticum 9 e-139 86%
pCIP 2 212 Beta-lactamase Domain Containing Protein YP_006790168 Exiguobacterium antarticum 1 e-144 96%
pTMP 1 128 Diemethyladenoanine Transferase YP_001906668.1 Erwinia tasmanienaia 1 e-82 94%
pTMP 2 125 Protein ApaG (Protein Cor D) YP_003532282.1 Erwinia amylovora CFBP1430 2 e- 78 88%
pTMP 3 234 Bis (5′-nucleoayl) Tetraphosphotase YP_003740080.1 Erwinia billingiae 4 e- 151 88%
pTMP 4 171 Protein FolA YP_ 005801502.1 Erwinia pyrifoliae DSM 12163 3 e-115 93%
pTMP 5 91 Rhtb Family Transporter YP_003532285.1 Erwinina amylovora CFB1430 9 e-54 97%
pAZT 1 151 Hypothetical Protein BsI_26310 ZP_21117554.1 Bacillus Subtilis subsp inaquoaorm 2 e-108 99%
pAZT 2 651 Penicillin Binding Protein 2c ZP_21117553.1 Bacillus Subtilis 0.00 99%
pSXT 1 170 Dihydrofolate Reductase YP_002875292.1 Pseudomonas fluorsencens 4 e-112 94%
pSXT 2 139 Sodium: Dicarboxylate Symporter ZP_0778142.1 Pseudomonas fluorsencens 3 e-93 96%

OrFinder, BlastX and BlastP were used to identify each open reading frame.

Berman and Riley

Berman and Riley BMC Microbiology 2013 13:272   doi:10.1186/1471-2180-13-272

Open Data