Open Access Research article

Comparative genome analysis of 19 Ureaplasma urealyticum and Ureaplasma parvum strains

Vanya Paralanov1, Jin Lu2, Lynn B Duffy2, Donna M Crabb2, Susmita Shrivastava1, Barbara A Methé1, Jason Inman1, Shibu Yooseph1, Li Xiao2, Gail H Cassell2, Ken B Waites2 and John I Glass1*

Author Affiliations

1 J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA

2 University of Alabama at Birmingham, 1530 3rd Ave. S., Birmingham, AL, 35294, USA

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BMC Microbiology 2012, 12:88  doi:10.1186/1471-2180-12-88

Published: 30 May 2012

Additional files

Additional file 1:

Clinical isolates supplementary material. Contains information about the relatedness of the four sequenced urealyticum clinical isolates to the ATCC stains and genes in their unique areas.

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Additional file 2:

Figures S1-S5. Contains figures of additional phylogenetic trees.

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Additional file 3:

Comparative Genomics Tables. Contains interactive tables of all gene clusters among the 19 ureaplasma genomes, % GC table, and a table of the genes from restriction modification systems in all 14 ATCC ureaplasma serovar strains.

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Additional file 4:

Table S1. Contains anticodon table of tRNAs showing count of tRNAs used by human ureaplasmas.

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Additional file 5:

All Genes Encoding Recombinase or Transposase Proteins in All 19 Ureaplasma Genomes. Contains a table of all genes in the 19 ureaplasma genomes that encode recombinase or transposase proteins.

Format: XLS Size: 26KB Download file

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