Table 3

The efficiency andr2-value results from laboratory evaluation of the BactQuant assay using genomic DNA from ATCC strains and clinical isolates belonging to 106 unique bacterial species spanning eight bacterial phyla
Species Name Reaction efficiency r2-value
Streptomyces violaceoruber 93% >0.999
Mycobacterium abscessus 110% >0.999
Mycobacterium bovis 106% >0.996
Mycobacterium chelonae 101% >0.999
Mycobacterium gastri 104% >0.999
Mycobacterium gordonae 104% >0.999
Mycobacterium fortuitum 93% >0.999
Mycobacterium kansasii 107% >0.999
Mycobacterium marinum 110% >0.990
Mycobacterium nonchromogenicum 101% >0.999
Mycobacterium phlei 104% >0.999
Mycobacterium smegmatis 105% >0.999
Mycobacterium vaccae 120% >0.999
Mycobacterium xenopi 112% >0.999
Bacteroides ureolyticus 92% >0.999
Bacteroides fragilis 82% >0.993
Chlamydia trachomatis N/A N/A
Chlamydophila pneumoniae N/A N/A
Thermus thermophilus 97% >0.999
Clostridium difficile 88% >0.987
Listeria monocytogenes 104% >0.999
Staphylococcus arlettae 96% >0.998
Staphylococcus capitis 95% >0.993
Staphylococcus cohnii 104% >0.999
Staphylococcus epidermidis 96% >0.999
Staphylococcus equorum 85% >0.997
Staphylococcus hominis 108% >0.999
Staphylococcus haemolyticus 90–104% >0.999
Staphylococcus kloosii 98% >0.999
Staphylococcus lugdunensis 94% >0.999
Staphylococcus saprophyticus 87–98% >0.999
Staphylococcus xylosus 81–100% >0.999
Streptococcus agalactiae 98% >0.998
Streptococcus pneumoniae 98% >0.999
Streptococcus viridans 103% >0.999
Enterococcus faecium 91–111% >0.999
Enterococcus faecalis 90–100% >0.998
Fusobacterium nucleatum 90% >0.999
Burkholderia pseudomallei 103% >0.999
Coxiella burnetti* 100% >0.998
Francisella tularensis 100% >0.999
Legionella pneumophila 98% >0.999
Neisseria gonorrhoeae 95% >0.997
Pseudomonas aeruginosa 90–100% >0.999
Pseudomonas mendocina 93% >0.999
Pseudomonas andersonii 90% >0.999
Pseudomonas otitidis 93% >0.999
Pseudomonas stutzeri 86% >0.999
Pseudomonas monteilii 88% >0.999
Pseudomonas azotofixans 84% >0.999
Pseudomonas mosselii 92% >0.999
Pseudomonas luteola 91% >0.999
Pseudomonas putida 90% >0.999
Pseudomonas fluorescens 96% >0.999
Pseudomonas taetrolens 89% >0.999
Pseudomonas fragi 93% >0.999
Pseudomonas syringae 95% >0.999
Pseudomonas pseudoalcaligenes 93% >0.999
Pseudomonas lundensis 93% >0.999
Pseudomonas anguiliseptica 93% >0.999
Cellvibrio gilvus 92% >0.999
Acinetobacter baumannii 100–105% >0.999
Arsenophonus nasoniae 87% >0.998
Budvicia aquatica 88% >0.999
Buttiauxella gaviniae 107% >0.999
Cedecea davisae 97% >0.999
Citrobacter freundii 95% >0.999
Cronobacter sakazakii 96% >0.999
Edwardsiella tarda 106% >0.999
Enterobacter cloacae 89–111% >0.999
Enterobacter aerogenes 107% >0.998
Escherichia vulneris 93% >0.999
Escherichia coli 91–96% >0.999
Ewingella americana 97% >0.999
Haemophilus influenzae 91–110% >0.999
Hafnia alvei 93% >0.999
Klebsiella oxytoca 93% >0.999
Klebsiella pneumoniae 95–100% >0.999
Kluyvera ascorbata 100% >0.999
Leclercia adecarboxylata 93% >0.999
Leminorella richardii 94% >0.999
Moellerella wisconsensis 93% >0.999
Moraxella catarrhalis 91–106% >0.999
Morganella morganii 95% >0.999
Obesumbacterium proteus 114% >0.994
Pantoea agglomerans 93% >0.999
Pectobacterium atrosepticum 90% >0.999
Photorhabdus asymbiotica 96% >0.999
Plesiomonas shigelloides 93% >0.999
Pragia fontium 100% >0.998
Proteus mirabilis 98% >0.999
Providencia rustigianii 93% >0.999
Rahnella aquatilis 92% >0.999
Raoultella ornithinolytica 94% >0.999
Salmonella enterica 101% >0.999
Salmonella enterica subsp. enterica serovar gallinarum 95% >0.998
Serratia liquefaciens 94% >0.999
Shigella dysenteriae 98% >0.999
Tatumella ptyseos 101% >0.999
Trabulsiella guamensis 95% >0.999
Yokenella regensburgei 96% >0.999
Yersinia enterocolitica 98% >0.999
Campylobacter jejuni 89% >0.999
Vibrio cholerae 85% >0.996
Borrelia burgdorferi 90% >0.999
Treponema denticola 82% >0.999

*No 16 S rRNA gene sequence available in the Ribosomal Database Project.

Liu et al.

Liu et al. BMC Microbiology 2012 12:56   doi:10.1186/1471-2180-12-56

Open Data