Table 4

Percent Identity (below the diagonal) and Divergence (above the diagonal) matrix of 3' UTR sequence of different Alphavirus isolates
1 2 3 4 5 6 7 8 9 10
1. ALPV_M1 0.0035 0.0046 0.0023 0.0011 0.0118 0.0626 0.0035 0.0035 0.0011
2. GETV_HB0234 99.65% 0.0082 0.0012 0.0023 0.0155 0.0640 0.0023 0.0023 0.0046
3. GETV_LEIV_16275_Mag 99.54% 99.18% 0.0070 0.0058 0.0142 0.0656 0.0082 0.0082 0.0058
4. GETV_LEIV_17741_MPR 99.77% 99.88% 99.30% 0.0012 0.0143 0.0625 0.0011 0.0012 0.0035
5. GETV_M1 99.89% 99.77% 99.42% 99.88% 0.0130 0.0641 0.0023 0.0023 0.0023
6. GETV_MM2021 98.82% 98.45% 98.58% 98.57% 98.70% 0.0781 0.0155 0.0155 0.0130
7. GETV_S_Korea 93.74% 93.60% 93.44% 93.75% 93.59% 92.19% 0.0639 0.0640 0.0626
8. GETV_YN08 99.65% 99.77% 99.18% 99.89% 99.77% 98.45% 93.61% 0.0023 0.0046
9. GETV_YN0540 99.65% 99.77% 99.18% 99.88% 99.77% 98.45% 93.60% 99.77% 0.0046
10.SAGV(DNA) 99.89% 99.54% 99.42% 99.65% 99.77% 98.70% 93.74 99.54% 99.54%

Hu et al.

Hu et al. BMC Microbiology 2012 12:305   doi:10.1186/1471-2180-12-305

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