Table 2

Homology comparison of nucleotide (below the diagonal) and amino acid sequences (above the diagonal) of non-structural protein gene nsP3 of YN08 isolates Getah virus with other Alphavirus isolates
1 2 3 4 5 6 7 8 9
1. AlpV_M1 99.07% 98.89% 98.89% 99.07% 100% 98.89% 98.70% 99.07%
2. GETV_S_Korea 98.4% 99.63% 99.07% 99.63% 99.07% 99.82% 99.44% 98.89%
3. GETV_HB0234 98.1% 99.4% 98.89% 99.26% 98.89% 99.44% 99.44% 98.70%
4. GETV_LEIV_16275_MAG 97.9% 97.4% 97.2% 99.07% 98.89% 98.89% 98.70% 99.07%
5. GETV_LEIV_17741_MPR 98.6% 98.8% 98.5% 97.9% 99.07% 99.44% 99.07% 98.89%
6. GETV_M1 99.9% 98.5% 98.2% 98.0% 98.7% 98.89% 98.70% 99.07%
7. GETV_YN08 98.0% 99.3% 99.3% 97.1% 98.3% 98.1% 99.26% 98.70%
8. GETV_YN0540 98.1% 99.4% 99.1% 97.2% 98.5% 98.2% 99.0% 98.51%
9. SAGV 98.1% 97.5% 97.2% 98.5% 97.9% 98.2% 97.1% 97.2%

Hu et al.

Hu et al. BMC Microbiology 2012 12:305   doi:10.1186/1471-2180-12-305

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