Table 1

Haemophilus strains selected for study
Strain name Type Geographic location Year Length of sequence (Mb) Disease/ Site of isolation
RM7190 a Malaysia 1973 1.5 meningitis
RM6062 a England 1965 1.5 nasopharynx
RM6064 a England 1966 1.5 pleural fluid
RM6073 a England 1966 1.6 bronchitis
RM7017 b Ghana 1983 1.6 CSF
RM7060 b New York, USA 1971 1.5 nasopharynx
RM7414 b Kenya 1980’s 1.5
RM7419 b Kenya 1980’s 1.5
RM7651 b Norway 1976 1.7
DC11238 b UK 2003 1.8 meningitis
DC800 b UK 1989 1.9 meningitis
DC8708 b UK 2000 1.8
DCG1574 b Gambia 1993 1.8 nasopharynx
Eagan b 1.5
RM7578 b Switzerland 1983 1.8
RM7582 b RSA 1980’s 1.8
RM7598 b USA 1985 1.8
RM7018 b* Ghana 1983 1.4 CSF
RM7122 b* Australia <1984 1.5 meningitis
RM7459 b* Iceland 1984 1.4 CSF
RM7465 b* Iceland 1985 1.6 CSF
RM7617 b* Malaysia 1970’s 1.5 CSF
RM6132 c England 1964 1.6 chronic sinusitis
RM6134 c England 1975 1.4 abscess
RM7422 c Kenya 1986 1.4
RM6158 e England 1962 1.7 cystic fibrosis
RM6237 f England 1963 1.4 nasal discharge
RM7283 f Malaysia 1972 1.5 trachea
RM7290 f Malaysia 1974 1.5 trachea(malnutrition)
PLMIOG2822H-L H. haemolyticus 1.6
PLh.hlnctc10659T H. haemolyticus 1.6
PLHparaphorH-L H. paraphrophilus 1.7
PLMIOG2838H-L H. haemolyticus 1.4
DCMO-099-5-LST-8 H. parainfluenzae UK 1997 1.7 nasopharynx (commensal)
DCMO-099-8-MST-8 H. parainfluenzae UK 1997 1.6 nasopharynx (commensal)
DCO-CFE24-1-T2ST-27 H. parainfluenzae UK 2001 1.8 nasopharynx (commensal)
DCO-OM30-1-A1 H. parainfluenzae UK 2001 1.6 nasopharynx (commensal)
DCT2T1ST-34 H. parainfluenzae Gambia 2001 1.9 nasopharynx (commensal)
DCT5A1ST-41 H. parainfluenzae Gambia 2001 1.9 nasopharynx (commensal)
DCT7B2ST-47 H. parainfluenzae Gambia 2001 1.8 nasopharynx (commensal)
DCT8A1ST-52 H. parainfluenzae Gambia 2001 1.9 nasopharynx (commensal)
RY15 H. parainfluenzae 1.7 nasopharynx (commensal)
RY20 H. parainfluenzae 1.7 nasopharynx (commensal)
RY22 H. parainfluenzae 1.9 nasopharynx (commensal)
RY8 H. parainfluenzae 1.7 nasopharynx (commensal)
DCT2B3ST-33 hybrid Gambia 2001 1.4 nasopharynx (commensal)
DCG-T53T1 hybrid Gambia 2001 1.5 nasopharynx (commensal)
DCT8B3ST-51 hybrid Gambia 2001 1.5 nasopharynx (commensal)
DH1500spain NTHi Spain 2000 1.4 COPD
DH1559spain NTHi Spain 2000 1.5 COPD
DH1630spain NTHi Spain 2000 1.3 COPD
DH398spain NTHi Spain 2000 1.5 COPD
Fi176 NTHi Finland 1995 1.5 otitis media
Fi723 NTHi Finland 1995 1.6 otitis media
Fi981 NTHi Finland 1995 1.7 otitis media
RM6011 NTHi UK 1984 1.3 meningitis
RM6019 NTHi UK 1984 1.3 meningitis
RM6033 NTHi UK 1984 1.5 pus hydrosalpinx
RM6051 NTHi UK 1985 1.5 CSF
RM7028 NTHi PNG 1980’s 1.5 blood
RM7308 NTHi South Korea 1984 1.5 nasopharynx
RM7309 NTHi South Korea 1984 1.5 nasopharynx
RM7347 NTHi USA 1985 1.4 sputum
RM7448 NTHi Iceland 1978 1.4 blood
RM7477 NTHi Iceland 1986 1.6
RM7490 NTHi RSA 1980’s 1.6 CSF
DH1513spain NTHi Spain 2000 1.5 COPD
Fi1180 NTHi Finland 1995 1.6 otitis media
Fi162 NTHi Finland 1995 1.7 otitis media
Fi667 NTHi Finland 1995 1.7 otitis media
RM7029 NTHi PNG 1980’s 1.6 blood
RM7637 NTHi China 1971 1.4 sputum
DC7331 NTHi UK 1997 1.8 meningitis
DC7654 NTHi UK 1997 1.8 blood
DC7695 NTHi UK 1997 1.9 CSF
DCg2120 NTHi Gambia 1.8 nasopharynx
DCH3151 NTHi Gambia 1993 1.8 pneumonia
DCO-OM33-2B3ST-21 NTHi UK 2001 1.5 nasopharynx
PLMIOG2819 1.5
PLMIOG2820 1.5
RM6006 1.4
PLMIOG2836 1.7
DCMO-009-14-S-TR-ST-12 UK 1998 1.6 nasopharynx
PL10839T 1.6
PLMIOG2837 1.6
RM7054 NTHi USA 1984 blood (sepsis)
Fi1247 NTHi Finland 1995 otitis media
Fi1124 NTHi Finland 1995 otitis media
Fi486 NTHi Finland 1995 otitis media
Fi432 NTHi Finland 1995 otitis media
RM7068 NTHi PNG pneumonia
Fi285 NTHi Finland 1995 otitis media
PP H.parasuis NTHi
RM7876
Fi1200 NTHi Finland 1995 otitis media
RM7066

The 96 strains selected for genome sequencing are listed along with respective information on serotype, isolation, and associated disease. The total length of the genome sequence following assembly is listed (to the nearest 0.1 Mbp) for each strain. The 11 strains below the horizontal line are those for which the quality of the assembled genome sequence was insufficient for the sequence data to be included in subsequent analyses.

* Strains were originally designated as NT.

Power et al.

Power et al. BMC Microbiology 2012 12:273   doi:10.1186/1471-2180-12-273

Open Data