Table 3 |
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|
Characterization of MSSA isolates from Nigeria by antibiotic susceptibility pattern, detection of antibiotic and virulence genes, spa typing and MLST |
||||||||
|
Isolate No |
Location |
Sample Or Clinical Diagnosis |
Antibiotype |
Antibiotic resistance genes |
Toxin genes |
spa type |
MLST |
Clonal Complex (CC) |
|
|
||||||||
|
09-01760 |
Ife |
Wound Infection |
PEN, CIP, SXT |
- |
lukPV, seh |
t127 |
CC1 |
|
|
09-01823 |
Ife |
Wound Infection |
PEN, OTE |
tetK |
lukPV, seh |
t127 |
||
|
09-01785-1 |
Ibadan |
Conjunctivitis |
PEN |
- |
lukPV, seh |
t114 |
||
|
09-01787 |
Maiduguri |
Wound Infection |
PEN, OTE |
tetK |
seh |
t321 |
1 |
|
|
|
||||||||
|
09-01733 |
Ife |
Otitis media |
PEN, SXT |
- |
lukPV |
t311 |
CC5 |
|
|
09-01738 |
Lagos |
Urinary tract infection |
PEN, ERY, OTE, CIP, SXT |
tetM, mrsA |
- |
t311 |
5 |
|
|
09-01777 |
Ibadan |
Wound Infection |
PEN, CIP |
- |
- |
t311 |
||
|
09-01815 |
Maiduguri |
Otitis media |
PEN, ERY, OTE, SXT |
tetM, mrsA |
- |
t311 |
||
|
|
||||||||
|
09-01737 |
Lagos |
Semen (Infertility) |
PEN, GEN, OTE, SXT |
aacA-aphD, tetK |
- |
t951 |
CC8 |
|
|
09-01742 |
Lagos |
Unknown |
PEN, OTE |
tetK |
- |
t1617 |
8 |
|
|
09-01780 |
Ibadan |
Conjunctivitis |
PEN, SXT |
- |
- |
t064 |
||
|
09-01796 |
Maiduguri |
Sputum (Unknown) |
PEN, OTE, SXT |
tetK |
- |
t064 |
||
|
09-01810 |
Ife |
Sputum (Unknown) |
PEN, OTE, CIP, SXT |
tetK |
- |
t1496 |
||
|
09-01817-1 |
Maiduguri |
Urinary tract infection |
PEN, OTE, SXT |
tetK |
- |
t1496 |
||
|
09-01819 |
Maiduguri |
Semen (Infertility) |
PEN, OTE, SXT |
tetK |
- |
t2812 |
||
|
09-01822 |
Ife |
Sputum (Unknown) |
PEN, OTE, SXT |
tetK |
- |
t1496 |
||
|
|
||||||||
|
09-01734 |
Ife |
Unknown |
PEN, OTE, SXT |
tetK |
- |
t084 |
CC15 |
|
|
09-01736 |
Lagos |
Otitis media |
OTE |
tetM |
- |
t084 |
||
|
09-01750 |
Ife |
Nasal* |
PEN, SXT |
- |
lukPV |
t084 |
||
|
09-01751 |
Ife |
Nasal* |
PEN, SXT |
- |
lukPV |
t084 |
15-slv |
|
|
09-01752 |
Ife |
Nasal* |
SXT |
- |
lukPV |
t084 |
||
|
09-01755 |
Ife |
Nasal* |
PEN, OTE, SXT |
tetK |
- |
t084 |
||
|
09-01756 |
Ife |
Nasal* |
PEN, OTE, CIP, SXT |
tetK |
- |
t084 |
||
|
09-01799 |
Maiduguri |
Otitis media |
PEN, OTE, SXT |
tetK |
- |
t084 |
||
|
09-01801 |
Maiduguri |
Otitis media |
PEN, OTE, SXT |
tetK |
- |
t084 |
||
|
09-01805 |
Ife |
Blood Infection |
OTE |
tetM |
- |
t084 |
15-slv |
|
|
09-01820 |
Ife |
Wound Infection |
PEN, SXT |
- |
- |
t084 |
||
|
09-01821 |
Ife |
Wound Infection |
PEN, OTE, SXT |
tetK |
- |
t084 |
||
|
09-01824 |
Ife |
Wound Infection |
CIP, SXT |
- |
- |
t084 |
||
|
09-01788 |
Maiduguri |
Wound Infection |
PEN, OTE, SXT |
tetK |
- |
t2216 |
||
|
09-01798 |
Maiduguri |
Semen (Infertility) |
PEN, OTE, SXT |
tetK |
- |
t2216 |
15 |
|
|
09-01804 |
Maiduguri |
Wound Infection |
PEN, OTE, SXT |
tetK |
- |
t2216 |
||
|
09-01806 |
Ife |
Unknown |
PEN, SXT |
- |
- |
t328 |
||
|
09-01813 |
Ife |
Wound Infection |
PEN, SXT |
- |
- |
t5387 |
||
|
|
||||||||
|
09-01740 |
Lagos |
Wound Infection |
PEN, CIP, SXT |
- |
lukPV |
t318 |
CC30 |
|
|
09-01743 |
Lagos |
Wound Infection |
CIP, SXT |
- |
lukPV |
t318 |
30 |
|
|
09-01747-2 |
Lagos |
Wound Infection |
Susceptible to all antibiotics |
- |
lukPV |
t318 |
30 |
|
|
09-01779 |
Ibadan |
Wound Infection |
PEN, CIP, SXT |
- |
lukPV |
t021 |
||
|
09-01825 |
Ife |
Otitis media |
PEN, CIP |
- |
- |
t631 |
||
|
09-01732 |
Ile-Ife |
Unknown |
PEN, SXT |
- |
lukPV |
t159 |
CC121 |
|
|
09-01759 |
Ile-Ife |
Wound Infection |
PEN, SXT |
- |
lukPV |
t314 |
||
|
09-01797 |
Maiduguri |
Wound Infection |
OTE |
tetK |
lukPV |
t314 |
||
|
09-01826 |
Ile-Ife |
Otitis media |
PEN |
- |
lukPV |
t159 |
121 |
|
|
09-01745 |
Lagos |
Semen (Infertility) |
PEN, SXT |
- |
lukPV |
t2304 |
121 |
|
|
09-01781 |
Ibadan |
Wound Infection |
PEN, OTE, SXT |
tetK |
lukPV |
t2304 |
||
|
|
||||||||
|
09-01761 |
Ife |
Wound Infection |
PEN |
- |
lukPV |
t355 |
singleton |
|
|
09-01762 |
Ife |
Wound Infection |
PEN |
- |
lukPV |
t355 |
||
|
09-01778 |
Ibadan |
Wound Infection |
PEN, CIP |
- |
lukPV |
t355 |
||
|
09-01790 |
Maiduguri |
Wound Infection |
Susceptible to all antibiotics |
- |
- |
t355 |
152 |
|
|
09-01793 |
Maiduguri |
Wound Infection |
PEN |
- |
lukPV |
t355 |
||
|
09-01803 |
Maiduguri |
Wound Infection |
PEN, OTE, SXT |
tetK |
lukPV |
t355 |
||
|
|
||||||||
|
09-01753 |
Ife |
Nasal* |
PEN, SXT |
- |
etd |
t3772 |
25 |
singleton |
|
09-01754 |
Ife |
Nasal* |
PEN, SXT |
- |
etd |
t3772 |
||
|
09-01757 |
Ife |
Nasal* |
PEN, SXT |
- |
etd |
t3772 |
||
|
|
||||||||
|
09-01802 |
Maiduguri |
Wound Infection |
PEN, CIP |
- |
- |
t939 |
45 |
CC45 |
|
|
||||||||
|
09-01792 |
Maiduguri |
Wound Infection |
PEN, OTE |
tetK |
- |
t458 |
97 |
CC97 |
|
|
||||||||
|
09-01800 |
Maiduguri |
Wound Infection |
PEN, OTE, SXT |
tetK |
lukPV, etd |
t934 |
80 |
CC80 |
|
|
||||||||
|
aClonal complex (CC) inferred from MLST and spa typing *Nasal isolates from apparently healthy male students slv: single locus variant Geographical region: South-West Nigeria (Ile-Ife, Ibadan and Lagos) North-East Nigeria (Maiduguri) |
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|
Shittu et al. BMC Microbiology 2011 11:92 doi:10.1186/1471-2180-11-92 |
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