Table 3

BLAST identifications of the excised DGGE bands

DGGE amplicon

Identification

Sequence

# Bp


Band nr

Primer

# Bp

Species

Accession Nr

% identity

Identical

Total


54.2

L1401-R

(V6-V8)

397

Uncultured bacterium

EF405354.1

98

385

389

Eubacterium contortum

L34615.1

93

364

390

Clostridium oroticum

M59109.1

94

367

389

Ruminococcus torques

L76604.1

93

365

389


60.1

518R

(V3)

139

Uncultured bacterium

EF403112.1

100

124

124

Ruminococcus productus

AY937379.1

98

122

124

Clostridium sp.

Y10584.1

98

122

124

Ruminococcus hansenii

M59114.1

97

121

124


45.9

Bfra 531F

241

Bacteroides fragilis

DQ100447.1

99

210

211

Bacteroides finegoldii

AB222700.1

98

207

211

Bacteroides thetaiotaomicron

AY319392.1

97

206

211


Vael et al. BMC Microbiology 2011 11:68   doi:10.1186/1471-2180-11-68

Open Data