Table 1

Enterococcus faecalis isolates used in this study. CC; clonal complex, CGH; comparative genomic hybridization, MLST; multilocus sequence typing, S; singleton, ST; sequence type.

Strain

Year

Country

Source

MLST

Application

Reference

ST

CC


TX0104

USA

Clinical

2

2

In silico

[65]

609/96

1996

Poland

Wound

6

2

CGH, PCR

[25]

372-56

2007

Norway

Blood

6

2

CGH, PCR

226B

2005

Norway

Feces

6

2

PCR

[27]

368-42

2007

Norway

Blood

6

2

PCR

442/05

2005

Poland

CSF

6

2

PCR

[25]

E1828

2001

Spain

Blood

6

2

PCR

[26]

MMH594

1985

USA

Clinical

6

2

CGHC, PCR

[66]

V583

1989

USA

Blood

6

2

CGH, PCR

[67]

158B

2005

Norway

Feces

6

2

CGHB, PCR

[27]

HH22

≤1982

USA

Urine

6

2

In silico

[29]

LMGT3303

6

2

CGHD, PCR

E1834

2001

Spain

Blood

51

2

CGH, PCR

[26]

E4250

2007

Netherlands

Feces

183

2

CGH, PCR

HIP11704

2002

USA

Clinical

4

4

In silico

[68]

E1841

2001

Spain

Blood

9

9

CGH, PCR

[26]

Vet179

1999

Norway

Dog_urine

9

9

CGHD, PCR

[69]

CH188

1980s

USA

Liver

9

9

In silico

[70]

E1807

2002

Spain

Feces

17

9

CGH, PCR

[26]

X98

1934

Feces

19

19

In silico

[71]

OG1RF

≤1975

USA

Oral

1

21

CGHC, PCR

[72]

E1960

2001

Spain

Feces

8

21

CGH, PCR

[26]

T8

≤1992

Japan

Urine

8

21

In silico

[73]

2426/03

2003

Poland

Feces

21

21

CGH, PCR

[25]

ATCC 29200

≤1974

Canada

Urogenital

21

21

In silico

[74]

T1

≤1950

21

21

In silico

[73]

LMGT3406

1999

Denmark

Poultry_feces

22

21

CGHD, PCR

111A

2005

Norway

Feces

161

21

CGHB, PCR

[27]

TX1322

USA

161

21

In silico

[65]

3339/04

2004

Poland

Blood

23

25

CGH, PCR

[25]

UC11/46

Finland

Feces

97

25

CGH, PCR

[19]

189

2002-2003

Norway

Feces

162

25

CGHB, PCR

[27]

Symbioflor 1

Germany

Feces

248

25

CGHC, PCR

[75]

T2

≤1992

Japan

Urine

11

28

In silico

[73]

E1188

1997

Greece

Blood

28

28

CGH, PCR

[26]

383/04

2004

Poland

Blood

87

28

CGH, PCR

[25]

E1052

Netherlands

Feces

30

30

CGHD, PCR

85

2008

Norway

Feces

30

30

CGHB, PCR

[27]

597/96

1996

Poland

Ulcer

40

40

CGH, PCR

[25]

LMGT2333

Iceland

Fish

40

40

CGHD, PCR

JH1

≤1974

United Kingdom

Clinical

40

40

In silico

[76]

LMGT3209

Greece

Food_cheese

40

40

CGHD, PCR

1645

2007

Denmark

Blood

220

40

CGH, PCR

29C

2004

Norway

Feces

44

44

CGHB, PCR

[27]

92A

2005

Norway

Feces

44

44

CGHB

[27]

DS5

≤1974

55

55

In silico

[77]

E2370

Hungary

Wound

16

58

CGH, PCR

105

2002-2003

Norway

Feces

16

58

CGHB, PCR

[27]

D6

Denmark

Pig

16

58

In silico

[31]

E1Sol

1960s

Solomon Islands

Feces

93

93

In silico

[78]

Merz96

2002

USA

Blood

103

103

In silico

[79]

R712

USA

Clinical

103

103

In silico

[65]

S613

USA

Clinical

103

103

In silico

[65]

LMGT3405

1999

Denmark

Poultry_feces

116

116

CGHD, PCR

LMGT3407

1999

Denmark

Poultry_feces

34

121

CGHD, PCR

Fly1

2005

USA

Drosophila

101

101A

In silico

[31]

Vet138

1998

Norway

Dog_ear

164

119A

CGHD, PCR

[69]

82

2008

Norway

Poultry_feces

65

S

CGHD, PCR

T11

≤1992

Japan

Urine

65

S

In silico

[73]

62

2002-2003

Norway

Feces

66

S

CGHB, PCR

[27]

ATCC 4200

1926

Blood

105

S

In silico

AR01/DG

2001

New Zealand

Dog

108

S

In silico

[80]

266

2002-2003

Norway

Feces

163

S

CGHB, PCR

[27]

LMGT3143

Spain

Animal_wood pigeon

165

S

CGHD, PCR

LMGT3208

Greece

Food_cheese

166

S

CGHD, PCR

84

2008

Norway

Poultry_feces

249

S

CGHD, PCR

TuSoD ef11

USA

Clinical

364

S

In silico

[65]


AClonal complexes were no predicted founder was proposed by eBURST.

BIn Solheim et al. 2009.

CIn Vebø et al. 2010.

DMS, unpublished work.

Solheim et al. BMC Microbiology 2011 11:3   doi:10.1186/1471-2180-11-3

Open Data