Table 1

General features of putative ORFs from pKP1 with best matches to sequences in the public database

Protein or gene

Position

Size (nc/aa)

Proposed function

Source strain

% of identity (nc/aa)

GenBank accession no. (nc/aa)


RepB

600-1760

1161/386

replication protein

Lactococcus lactis plasmid pSRQ900

99/99

AF001314.1/NP_862549.1

RepX

1757-2344

588/195

replication associated protein

Lactococcus lactis plasmid pSRQ900

100/100

AF001314.2/NP_862550.1

HsdS

2320-3510

1191/396

LldI type R/M, specificity subunit (HsdS)

Lactococcus lactis plasmid pSRQ900

100/100

AF001314.2/NP_862551.1

pcp

3821-4468

648/215

pyrrolidone-carboxylate peptidase

Lactococcus lactis plasmid pSK11P

99/99

DQ149245.1/ABA43397.1

mbpL

5022-8018

2997/998

mucin-binding domain protein

Leuconostoc citreum KM20 plasmid pLCK1/Enterococcus faecalis TX1322

84/53

DQ489740.1/ZP_04433966.1

Tnp

9170-8484

687/228

IS1216 transposase

Enterococcus faecalis strain

EF-01 plasmid pEF-01/Enterococcus faecalis

99/99

CP002208.2/YP003896017.1

aggL

9526-14829

5304/1767

lactococcal aggregation factor

No similarity/Oenococcus oeni AWRIB429.

-/51

-/ZP06554154.1


nc - nucleotide

aa - amino acid

Kojic et al. BMC Microbiology 2011 11:265   doi:10.1186/1471-2180-11-265

Open Data