Additional file 4.
Table of identified proteins with in-house refined database. Abbreviations; a) Synonym, Tag number in SF370 genome; b) Gene, gene name; c) PID, GI number of protein in NCBInr database; d) COGs code, abbreviation of functional categories in Clusters of Orthologous Groups project. Each one letter abbreviation is detailed in the manuscript, and Additional file 5 and 6; e) MSD, the number of membrane spanning domain that calculated by SOSUI program; f) SP, the probability score of the signal peptide prediction with SignalP 3.0 program (Hidden Markov Model); g) Abbreviation in "static", "CO2", and "shake" columns: score, MASCOT score; %AA, coverage percent in amino acid; seq, spectrum matched number for unique sequence; emPAI, experimental modified Peptide Abundant Index.
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Okamoto and Yamada BMC Microbiology 2011 11:249 doi:10.1186/1471-2180-11-249