Table 2

Restriction types (RTs) and eBURST grouping of Italian and Mexican maize-rhizosphere BCC6 isolates.

RT

Isolate namea

RFLP typeb

IIIB-specific PCRc

Alleles at the following loci

recA

gyrB

fliC

cepIR

dsbA


Group 1 (RT-104-complex)

20

MexII-195

AD

+

14

9

5

4

2

26 (3)d

MCII-88e

AD

+

14

1

3

2

1

34 (8)d

MVP-C2-23e

AD

-

14

9

2

5

1

35 (2)d

MVP-C2-60e

AD

+

14

8

2

5

1

37 (2)d

MDII-107re

AD

-

14

4

2

5

1

40

MVP-C2-21

AD

-

14

9

2

5

2

54

MexII-989

AD

+

14

4

5

4

1

55 (2)d

MDIII-T18e

AD

+

14

8

3

4

1

56

MexII-992

AD

-

14

8

2

1

2

58

MexII-1011

AD

-

14

9

1

6

1

59 (2)d

MexII-1005e

AD

+

14

9

1

3

2

60 (2)d

MexII-983e

AD

-

14

9

5

3

1

72

MCII-179

AD

+

14

1

4

2

1

77

MCII-13

AD

+

14

1

4

2

1

79 (2)d

MVP-C2-81e

AD

-

14

9

2

3

1

81 (6)d

MVP-C1-16e

AD

-

14

8

2

4

1

82 (3)d

MVP-C2-2e

AD

-

14

9

2

4

1

84

MDIII-P152

AD

-

14

9

3

4

2

85

MDIII-P253

AD

+

14

4

3

4

1

86

MDIII-P292

AD

-

14

8

5

1

1

87

MVP-C1-15

AD

-

14

8

2

4

2

88

MDIII-P3

AD

+

14

9

1

4

1

89

MCII-23

AD

+

14

2

2

5

1

95 (2)d

MCII-35e

AD

+

14

1

2

2

2

96

MCII-134

AD

+

14

1

3

2

2

97

MVP-C2-1

AD

+

14

7

2

4

2

98 (2)d

MDII-125re

AD

+

14

10

2

4

1

99

MDII-103r

AD

-

14

9

3

4

1

104*

MDII-105r

AD

+

14

4

2

4

1

104*

MVP-C1-79

AD

-

14

4

2

4

1

106 (2)d

MDII-144pe

AD

+

14

4

2

4

2

110

MVP-C2-84

AD

-

14

4

2

2

2

111

MVP-C2-67

AD

-

14

8

2

1

1

113

MDII-110r

AD

-

14

10

2

5

1

116

MDIII-T258

AD

+

14

4

2

1

1

122

MexII-858

AD

-

14

9

2

3

2

Singletons

19

MexII-125

AD

-

14

9

6

1

1

38

MDIII-T109

AD

+

14

9

4

1

2

61

MexII-831

AD

-

14

10

3

10

1

76

MCII-182

AD

+

14

1

5

6

1


a, b, c, * see legend Table 1.

d In parenthesis, no. of isolates with same RT. RT26 (MCII-88, MCIII-CA-1, MCIII-CC-35); RT34 (MVP-C2-23, MVP-C2-53, MVP-C2-57, MVP-C2-63, MVP-C2-64, MVP-C2-76, MVP-C2-82, MDII-116r); RT35 (MVP-C2-60, MVP-C2-62); RT 37 (MDII-107r, MVP-C2-58); RT55 (MDIII-T18, MexII-829); RT59 (MexII-1005, MexII-1006); RT60 (MexII-983, MexII-984); RT79 (MVP-C2-81, MVP-C2-90); RT81 (MVP-C1-16, MVP-C1-21, MVP-C1-22, MVP-C1-78, MVP-C2-18, MDIII-P41); RT82 (MVP-C2-2, MDIII-B659, MDIII-P115); RT95 (MCII-35, MCII-36); RT98 (MDII-125r, MVP-C2-121p); RT106 (MDII-144p, MDIII-T301).

e representative isolate of RT.

Bevivino et al. BMC Microbiology 2011 11:228   doi:10.1186/1471-2180-11-228

Open Data