Table 1

Restriction types (RTs) and eBURST grouping of Italian and Mexican maize-rhizosphere B. cenocepacia IIIB isolates.

RT

Isolate namea

RFLP typeb

IIIB-specific PCRc

Alleles at the following loci

recA

gyrB

fliC

cepIR

dsbA


Group 1

74

MDII-143p

I

+

9

10

2

4

1

112

MDII-151p

I

+

9

8

2

4

1

Group 2

100

MDIII-B604

I

+

9

9

4

4

1

17

MexII-968

I

+

9

9

1

4

1

Group 3 (RT-4-complex)

115

MDIII-B752

J'

+

10

9

2

7

1

21

MDIII-P378

J'

+

10

4

2

1

1

21

MexII-864

J'

+

10

4

2

1

1

3

MexII-57

J'

+

10

10

2

1

2

7

MexII-60

J'

+

10

10

2

8

2

7

MexII-857

J'

+

10

10

2

8

2

6

MexII-815

J'

+

10

10

2

1

1

53

MexII-845

J'

+

10

8

1

1

1

31

MexII-940

J'

+

10

9

1

1

1

36

MexII-945

J'

+

10

4

2

6

1

4*

MexII-967

J'

+

10

9

2

1

1

67

MexII-974

J'

+

10

8

2

6

1

57

MexII-994

J'

+

10

8

2

1

2

Group 4

50

MexII-867

ukd

+

11

8

6

1

1

46

MexII-976

I

+

9

8

6

1

1

Singletons

80

MCII-168

J'

+

10

5

3

6

2

27

MDII-129r

I

+

9

4

2

6

2

75

MDIII-B250

J'

+

10

8

4

4

1

114

MDIII-B716

I

+

9

4

2

7

1

28

MDIII-P410

I

+

9

4

5

7

2

22

MDIII-P461

J'

+

10

4

2

7

2

29

MDIII-T228

I

+

9

4

4

1

1

103

MDIII-T521

J'

+

10

9

4

4

2

70

MexII-206

uke

+

13

10

5

7

2

47

MexII-264

J'

+

10

2

1

2

2

48

MexII-828

J'

+

10

2

2

4

1

33

MexII-863

J'

+

10

4

6

10

2


* The asterisk denotes the ancestral clone of the clonal complex.

a Italian isolates: MCII, MCIII, MVP-C1, MVP-C2, MDII, MDIII-B, MDIII-P, MDIII-T, followed by the number of isolate. Mexican isolates: MexII, followed by the number of isolate.

b recA RFLP with HaeIII.

c The presence and absence of specific PCR amplification for B. cenocepacia IIIB is indicated by a signus "+" and "-", respectively.

d, e uk, unknown RFLP profiles: restriction profiles never recovered among BCC reference strains examined [56].

Bevivino et al. BMC Microbiology 2011 11:228   doi:10.1186/1471-2180-11-228

Open Data