Table 3

The variable sites alignment of gdh gene fragment of G.duodenalis in 22 isolates of assemblage B.

2333333334

4445555555

55556666

Isolates/clones

7034568992

3450014566

67790122

4990707169

6761790814

70676247


ATCC50581

CTGACGCGTC

TCGCCCTGTG

CCGCCAAG

HT105

..........

........C.

........

HT123C1

..........

........C.

...T....

HT123C10

....T.....

......C.C.

.....G..

HT123C2

....T.....

........C.

...T....

HT123C4

....T.....

........C.

.T.T....

HT123C7

..........

........C.

.T.T....

HT140

......T...

........C.

........

HT142

..........

..........

........

HT187C1

..........

.T.....AC.

........

HT187C2

..........

........C.

........

HT187C3

....T.....

.T.....AC.

.....G..

HT187C4

....T.....

..........

....T..A

HT187C5

....T.....

....T.....

....T..A

HT187C6

....T.....

.T.....AC.

....T..A

HT187C8

....T.....

........C.

........

HT193C1

....T.....

..........

..A.....

HT193C2

..........

..........

..A.....

HT193C8

....T.....

....T.....

....T..A

HT193C9

..........

......C.C.

.....G..

HT57C1

..........

..........

........

HT57C2

..........

..A.....C.

.T......

HT57C3

..........

........C.

.T......

HT57C5

...G......

G.........

........

HT57C8

..........

G.........

........

Or172C1

.C..T....T

.T...TC.C.

.....G..

Or172C2

.........T

........C.

....T...

Or172C3

G..G......

.T...TC.C.

.....G..

Or172C4

....T.....

........C.

........

Or172C5

........C.

........C.

.....G..

Or172C6

.C..T....T

.T......C.

........

Or172C7

..........

.T...TC.C.

.....G..

Or172C8

.........T

.T...TC.C.

.....G..

Or176C1

..........

........C.

........

Or176C2

..........

........C.

....T...

Or176C9

........C.

........C.

....T...

Or284

....T.....

..........

....T...

Pre016

..........

........C.

........

Pre1117

.C..T....T

.....TC.CA

.....G..

Pre1402C1

..........

..........

....T..A

Pre1402C2

....T.....

........C.

....T..A

Pre1402C4

.......A..

....T...C.

.......A

Pre1402C5

..........

........C.

........

Pre1402C6

.......A..

........C.

........

Pre1402C7

....T..A..

.......AC.

........

Pre1402C8

....T.....

........C.

....T...

Pre1402C9

....T..A..

....T...C.

....T...

Pre2018

..........

........C.

........

Pre2103C1

..........

..A.....C.

........

Pre2103C2

..........

..A.....C.

T.......

Pre2103C3

..........

........C.

........

Pre2103C5

..........

........C.

T.......

Pre2320

....T.....

....T.....

....T..A

Pre2403C1

..........

.....TC.C.

...T..G.

Pre2403C10

.........T

.....T..C.

.T..T...

Pre2403C2

G.........

...T....C.

........

Pre2403C3

.C...A....

........C.

....T...

Pre2403C4

..A..A....

........C.

.T..T...

Pre2403C5

.........T

........C.

.T..T...

Pre2403C6

..........

...T....C.

.T......

Pre2403C7

..A..A...T

.....TC.C.

...T..G.

Pre2403C8

.........T

.....TC.C.

...T..G.

Pre3207

..........

........C.

......G.

TSH090

..........

..A.....C.

........

TSH1119

..........

..A.....C.

........

TSH1210

..........

........C.

...T....

TSH1250

..........

........C.

........


Amino Acid

LLKNLPDDPF

STQGGIYEFT

GVTGFRTG

..........

V..D...N..

A.........

........


Dots are identical sites. Numbers indicate nucleotide positions from start codon.

Siripattanapipong et al. BMC Microbiology 2011 11:206   doi:10.1186/1471-2180-11-206

Open Data