Table 1

Characteristics of the 12 VNTR loci in the reference H.pylori strains

Locus name

Position in the reference strains (bp)

Number of repeat times

Repeat unit size (bp)

Related gene in 26695

26695

HPAG1

J99

26695

HPAG1

J 99


VNTR-180

16605. . 16643

17912. . 17932

16761. . 16778

2

1

1

20

-

VNTR-263

42061. . 42115

43125. . 43167

42199. . 42252

4

3

4

14

rfbD

VNTR-614

129983. . 130389

125875. . 126119

1238315. . 1238474

9

5

3

53

dld

VNTR-557

120659. . 120675

118007. . 118023

116640. . 116673

1

1

2

17

-

VNTR-606

129957. . 130396

1189474. . 1189690

1238289. . 1238481

3

1

1

138

dld

VNTR-1801

485276. . 485316

452649. . 452673

448197. . 448261

1

1

2

27

hsdR

VNTR-2181

580530. . 580546

546643. . 546659

544199. . 544227

1

1

2

12

-

VNTR-2457

665196. . 665241

628875. . 628996

625968. . 626121

1

3

3

54

ppa

VNTR-2576

696789. . 697001

1067559. . 1067708

1112077. . 1112164

10

7

4

21

galU

VNTR-5062

1382502. . 1382594

1314612. . 1314776

1360215. . 1360348

8

14

11

12

-

VNTR-5282

1439274. . 1439284

1368268. . 1368279

1412390. . 1412413

1

1

2

12

clpX

VNTR-5581

1512724. . 1512751

1419518. . 1419531

1464638. . 1464651

2

1

1

14

-


Guo et al. BMC Microbiology 2011 11:197   doi:10.1186/1471-2180-11-197

Open Data