Table 1 |
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|
Characteristics of the 12 VNTR loci in the reference H.pylori strains |
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|
Locus name |
Position in the reference strains (bp) |
Number of repeat times |
Repeat unit size (bp) |
Related gene in 26695 |
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|
26695 |
HPAG1 |
J99 |
26695 |
HPAG1 |
J 99 |
|||
|
|
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|
VNTR-180 |
16605. . 16643 |
17912. . 17932 |
16761. . 16778 |
2 |
1 |
1 |
20 |
- |
|
VNTR-263 |
42061. . 42115 |
43125. . 43167 |
42199. . 42252 |
4 |
3 |
4 |
14 |
rfbD |
|
VNTR-614 |
129983. . 130389 |
125875. . 126119 |
1238315. . 1238474 |
9 |
5 |
3 |
53 |
dld |
|
VNTR-557 |
120659. . 120675 |
118007. . 118023 |
116640. . 116673 |
1 |
1 |
2 |
17 |
- |
|
VNTR-606 |
129957. . 130396 |
1189474. . 1189690 |
1238289. . 1238481 |
3 |
1 |
1 |
138 |
dld |
|
VNTR-1801 |
485276. . 485316 |
452649. . 452673 |
448197. . 448261 |
1 |
1 |
2 |
27 |
hsdR |
|
VNTR-2181 |
580530. . 580546 |
546643. . 546659 |
544199. . 544227 |
1 |
1 |
2 |
12 |
- |
|
VNTR-2457 |
665196. . 665241 |
628875. . 628996 |
625968. . 626121 |
1 |
3 |
3 |
54 |
ppa |
|
VNTR-2576 |
696789. . 697001 |
1067559. . 1067708 |
1112077. . 1112164 |
10 |
7 |
4 |
21 |
galU |
|
VNTR-5062 |
1382502. . 1382594 |
1314612. . 1314776 |
1360215. . 1360348 |
8 |
14 |
11 |
12 |
- |
|
VNTR-5282 |
1439274. . 1439284 |
1368268. . 1368279 |
1412390. . 1412413 |
1 |
1 |
2 |
12 |
clpX |
|
VNTR-5581 |
1512724. . 1512751 |
1419518. . 1419531 |
1464638. . 1464651 |
2 |
1 |
1 |
14 |
- |
|
|
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|
Guo et al. BMC Microbiology 2011 11:197 doi:10.1186/1471-2180-11-197 |
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