Table 3

Results from BLAST analysis of sequenced DGGE bands.

Marker

Band ID

BLAST nearest homology

(GenBank accession number)

% Identity


A

K 1

Acinetobacter sp. (FN563421)

96

B

K 2

Uncultured Myxococcales bacterium (FJ435015)

93

C

K 3

Lactobacillus sp. L21 (AF159000)

87

D

K 4

Lactobacillus sp. (FJ971864)

95

E

K 5

Lactobacillus sp. JN4 (AF157041)

90

Microaerobic

subsamplea

Campylobacter jejuni (GQ479820)

98

Lactobacillus sp. 30A (FJ971864)

98

Pseudomonas sp. CB10 (EU482914)

98

Pseudomonas sp. R-35702 (AM886093)

97

Aerobic

subsamplea

Campylobacter jejuni (GQ479820)

98

Lactobacillus sp. JN4 (AF157041)

83

Pseudomonas sp. CB11 (EU482915)

98

Uncultured bacterium clone FF_e08 (EU469596)


Marker bands were used in all the gels.

a Unique DGGE bands from each subsample.

Zhou et al. BMC Microbiology 2011 11:175   doi:10.1186/1471-2180-11-175

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