Table 4

Genes containing the direct repeat sequence with no more than one mismatch

Gene IDa

Name

Startb

Sequencec

Endb

Product


SERP0164

-1

    GTTAA
ATTTAA
    TTTAA

-16

ATP:guanido phosphotransferase family protein

SERP0365

saeR

-488

    GTTAA
ATCATA
    TTTAA

-503

DNA-binding response regulator SaeR

SERP0371

-575

    GTTAA
TCTTCA
    TTTAA

-590

exsD protein

SERP0721

pheS

-648

    GATAA
CATGAT
    GTTAA

-663

phenylalanyl-tRNA synthetase, alpha subunit

SERP1745

deoC

-1091

    GTAAA
AATAAA
    GTTAA

-1106

deoxyribose-phosphate aldolase

SERP2192

cysH

-172

    GATAA
TCAAAA
    GTTAA

-187

phosophoadenylyl-sulfate reductase

SERP2360

-114

    GTTAA
ACCACC
    GTCAA

-129

3-hydroxyacyl-CoA dehydrogenase family protein

SERP2414

-270

    GTTAA
CAGATA
    GTAAA

-285

lipoprotein, putative


a These genes are identified in microarray analysis.

b The start point and end point are the distance from the translation start codon.

c Conserved repeat sequences are underlined.

Lou et al. BMC Microbiology 2011 11:146   doi:10.1186/1471-2180-11-146

Open Data