Table 5

Annotation of genes in the B. fragilis 638R Bfgi1 insertion.

ORF

Protein

Length

Putative function

% Id/Sima

Organismb

Accession no.c


1

411

Integrase protein

59/74 (411)

B. fragilis YCH46

AAS83518.1

2

119

Hypothetical protein

42/64 (114)

B. thetaiotaomicron

AA077037.1

3

162

Ctn042

37/59 (112)

B. fragilis YCH46

AAS83514.1

4

1828

DNA Methylase (BmhA)

57/71 (1339)

B. fragilis YCH46

AAS83508.1

5

143

Hypothetical protein

41/56 (121)

B. thetaiotaomicron

AA077432.1

6

709

Excisionase

57/72 (704)

B. fragilis YCH46

AAS83511.1

7

464

Hypothetical protein

41/57 (482)

B. thetaiotaomicron

AA075210.1

8

260

TetR/AcrR family

32/58 (204)

B. thetaiotaomicron

AA075614.1

9

161

Hypothetical protein

48/71 (108)

P. gingivalis W83

AA075614.1

10

780

Putative TonB OM Receptor

63/78 (780)

B. fragilis YCH46

BAD47377.1

11

412

Hypothetical protein

56/73 (398)

B. fragilis YCH46

CAH06331.1

12

187

Putative Ni-Co-Cd resistance protein

29/42 (110)

Syntrophus aciditrophicus SB

ABC78121.1

13

604

ABC Transporter

41/61 (570)

B. thetaiotaomicron

AA075616.1

14

593

ABC Transporter

43/63 (591)

B. thetaiotaomicron

AA075615.1

15

172

RteC

56/76 (80)

B. thetaiotaomicron

AAA22922.1

16

129

Peptidase S51

44/59 (100)

Listeria monocytogenes

AAT03167.1

17

114

Hypothetical protein

69/79 (73)

P. gingivalis W83

AAQ66123.1

18

138

Hypothetical protein

34/53 (135)

B. thetaiotaomicron

AA077558.1

19

431

C10 protease

26/43 (454)

B. thetaiotaomicron

AA077558.1

20

112

Hypothetical protein

27/72 (80)

Polaribacter irgensii

A4BZ61

21

512

ECF type σ-factor

31/50 (502)

B. thetaiotaomicron

AA077884.1

22

148

Hypothetical protein

43/58 (46)

Campylobacter upsaliensis

EAL52724.1

23

671

MobC

51/91 (660)

B. fragilis YCH46

AAS83500.1

24

408

MobB

53/71 (348)

B. fragilis YCH46

AAS83499.1

25

137

MobA

46/66 (136)

B. fragilis YCH46

AAS83498.1

26

260

TraA

53/71 (246)

B. fragilis YCH46

AAG17826.1

27

142

TraB

34/51 (133)

B. fragilis YCH46

BAD48110.1

28

135

TraC

34/55 (63)

B. fragilis YCH46

AAS83495.1

29

271

TraA

37/53 (251)

B. fragilis YCH46

BAD49765.1

30

196

TraD

26/37 (182)

B. thetaiotaomicron

AA077408.1

31

123

TraE

73/79 (78)

B. fragilis YCH46

BAD48110.1

32

126

TraF

56/66 (87)

B. fragilis YCH46

AAS83492.1

33

828

TraG

72/83 (829)

B. fragilis YCH46

BAD466872.1

34

209

TraI

65/80 (209)

B. fragilis YCH46

BAD46870.1

35

366

TraJ

70/86 (303)

B. fragilis YCH46

AAS83488.1

36

207

TraK

75/84 (207)

B. fragilis YCH46

AAS83487.1

37

110

TraL

37/58 (72)

B. fragilis YCH46

BAD48102.1

38

454

TraM

49/64 (439)

B. fragilis YCH46

BAD46866.1

39

310

TraN

70/84 (300)

B. fragilis YCH46

AAG17839.1

40

194

TraO

55/72 (177)

B. fragilis YCH46

BAD46864.1

41

292

TraP

52/67 (292)

B. fragilis YCH46

BAD46863.1

42

153

TraQ

60/76 (139)

B. fragilis YCH46

BAD48097.1

43

171

Lysozyme

53/73 (147)

B. fragilis YCH46

BAD46861.1

44

116

DNA Binding protein

75/80 (103)

P. gingivalis W83

AAQ66295.1

45

530

Hemerythrin

41/62 (508)

Alkaliphilus metalliredigens

EA081668.1

46

426

Ctn003

41/57 (441)

B. fragilis YCH46

BAD46856.1

47

176

Anti-restriction protein

52/71 (175)

B. fragilis YCH46

BAD48093.1

48

138

Ctn002

48/62 (115)

B. fragilis YCH46

BAD46855.1

49

200

Hypothetical protein

74/77 (31)

B. fragilis YCH46

BAD48092.1


a Percentage identity/similarity, the number in parenthesis is the number of amino acids used in the calculations.

b The organism encoding the B. fragilis 638R gene homologue.

cAccession number of the highest scoring BLAST hit with an annotated function.

Thornton et al. BMC Microbiology 2010 10:122   doi:10.1186/1471-2180-10-122

Open Data