Table 2

Total number of PPE18 epitopes predicted to bind each allele by the five programs that predicted epitope binding for the largest number of DRB1 alleles and the number and percentage of unconserved epitopes

No of total predicted epitopes

No of unconserved epitopes (%)

DRB1 Allele

ARB

ProPred

RankPep

NetMHCII

NetMHCIIpan

ARB

ProPred

RankPep

NetMHCII

NetMHCIIpan


0101

133

17

30

104

77

83 (62)

9 (53)

20 (67)

61 (59)

46 (60)

0301

17

8

0

0

1

13 (76)

4 (50)

0 (N/A)

0 (N/A)

1 (100)

0401

33

12

33

18

7

20 (61)

8 (67)

23 (70)

13 (72)

7 (100)

0404

47

15

5

14

10

30 (64)

10 (67)

5 (100)

14 (71)

8 (80)

0405

29

13

2

14

13

20 (69)

8 (62)

1 (50)

9 (64)

9 (69)

0701

31

7

6

16

28

22 (71)

5 (71)

4 (67)

11 (69)

19 (68)

0802

8

7

0

1

7 (87)

6 (86)

0 (N/A)

1 (100)

0901

35

3

22

21

18 (51)

3 (100)

13 (59)

14 (67)

1101

16

13

15

5

4

12 (75)

10 (77)

6 (40)

3 (60)

3 (75)

1301

7

0

1

6 (86)

0 (N/A)

1 (100)

1302

18

5

0

24

2

13 (72)

4 (80)

0 (N/A)

16 (67)

2 (100)

1501

14

10

1

12

7

10 (71)

8 (80)

1 (100)

6 (50)

5 (71)


McNamara et al. BMC Immunology 2010 11:18   doi:10.1186/1471-2172-11-18

Open Data