Table 5

MiRNAs that match with two predicted 7-bp motifs (one G-U pair allowed)

miRNA

7-bp motif

MBS index

Match position

Mature miRNA sequence*


miR-195

GTGTTGC

6

3-9

taGCAGCACagaaatattggc

CTGTGCT

16

5-11

tagcAGCACAGaaatattggc

miR-196b

ACAACAG

10

12-18

taggtagtttcCTGTTGTtgg

AGGGAAC

21

7-13

taggtaGTTTCCTgttgttgg

miR-330

CTGTGCT

16

5-11

gcaaAGCACAGggcctgcagaga

GGTCCTG

18

9-15

gcaaagcaCAGGGCCtgcagaga

miR-666

GCTGTGC

2

6-12

agcggGCACAGCtgtgagagcc

CTGTGCT

16

5-11

agcgGGCACAGctgtgagagcc

miR-710

CAGGACT

19

4-10

ccaAGTCTTGgggagagttgag

CTCTTCC

29

11-17

ccaagtcttgGGGAGAGttgag


Wang et al. BMC Genomics 2008 9(Suppl 1):S19   doi:10.1186/1471-2164-9-S1-S19

Open Data