Table 4

MiRNAs that match perfectly with predicted 7-bp motifs.

miRNA

7-bp motif

MBS index

Match position

Mature miRNA sequence*


miR-489

TGGTGTC

1

4-10

aatGACACCAcatatatggcagc

miR-666

GCTGTGC

2

6-12

agcggGCACAGCtgtgagagcc

miR-292-3p

ACCTGGC

8

8-14

aagtgccGCCAGGTtttgagtgt

miR-196b

ACAACAG

10

12-18

taggtagtttcCTGTTGTtgg

miR-685

GTGCCTC

14

15-21

tcaatggctgaggtGAGGCAC

miR-195

CTGTGCT

16

5-11

tagcAGCACAGaaatattggc

miR-330

CTGTGCT

16

5-11

gcaaAGCACAGggcctgcagaga

miR-424

GAATTGC

27

6-12

cagcaGCAATTCatgttttgga

miR-219

GAATTGC

27

14-20

tgattgtccaaacGCAATTCt

miR-488*

ACAGCCT

30

6-12

ttgaaAGGCTGTttcttggtc


Wang et al. BMC Genomics 2008 9(Suppl 1):S19   doi:10.1186/1471-2164-9-S1-S19

Open Data