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This article is part of the supplement: The 2007 International Conference on Bioinformatics & Computational Biology (BIOCOMP'07)

Open Access Research

Transcriptomic analysis of RDX and TNT interactive sublethal effects in the earthworm Eisenia fetida

Ping Gong1*, Xin Guan1, Laura S Inouye24, Youping Deng3, Mehdi Pirooznia3 and Edward J Perkins2

Author Affiliations

1 SpecPro Inc., 3909 Halls Ferry Road, Vicksburg, MS 39180, USA

2 Environmental Laboratory, U.S. Army Engineer Research and Development Center, 3909 Halls Ferry Road, Vicksburg, MS 39180, USA

3 Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406, USA

4 Current address: Washington State Department of Ecology, P.O. Box 47600, Olympia, WA 98504, USA

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BMC Genomics 2008, 9(Suppl 1):S15  doi:10.1186/1471-2164-9-S1-S15

Published: 20 March 2008

Additional files

Additional file 1:

Table S1. Hybridization scheme and array data deposition information.

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Additional file 2:

Table S2. The original significant gene lists derived using BRB Array Tools.

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Additional file 3:

Table S3. (a) Significant genes inferred from the microarray experimental data with expression and annotation information; (b) Average gene expression affected by mixture more than by TNT or RDX: examples.

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Additional file 4:

Figure S1. Dendrogram for clustering earthworm mRNA samples using Euclidean distance and average linkage.

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Additional file 5:

Figure S2. Dendrogram for clustering 329 significant earthworm transcripts using Euclidean distance and average linkage.

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Additional file 6:

Table S4. The collated array dataset for statistical analysis.

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