Table 1

The identified change points

ORF

Change-points

STEM No.

Scores.

Motifs


Rv0079

5,6

39

12.4

1

Rv0081

6

39

Rv0569

6,9

39

9.1

1

Rv0571c

6

N/A

10.3

1

Rv0572c

6

5

Rv0574c

6

39

13.2

1

Rv1733c

2,6

39

34.8

3

Rv1737c

6

39

46.6

4

Rv1738

2,3

38

46.6

4

Rv1812c

0

36

Rv1813c

6

39

11.8

1

Rv1997

6

39

17.1

2

Rv2003c

6

39

Rv2005c

6

39

11.4

1

Rv2006

6

39

11.4

1

Rv2007c

6

39

18.0

2

Rv2031c

2,5,6

39

36.0

3

Rv2032

6

39

36.0

3

Rv2623

6

39

9.42

1

Rv2625c

3,6

39

Rv2626c

5,6

39

23.2

2

Rv2627c

5,6

39

23.3

2

Rv2628

6,7(↓)

39

18.4

2

Rv2629

6

39

9.97

1

Rv2631

0

N/A

Rv2830

0

49

Rv3127

6

5

21.1

2

Rv3129

3,4,9(↓)

14

Rv3130c

5,6

39

9.7

1

Rv3131

6

39

9.7

1

Rv3134c

3,4(↓),6

39

24.6

2

Rv3841

0

24


Shown are the change points from the model with the highest probability, STEM cluster number (removed genes indicated by N/A), DosR-binding motif scores and numbers of motifs, and for the 32 TUs. All change points are upregulated except the ones indicated with arrows.

Zhang et al. BMC Genomics 2008 9:87   doi:10.1186/1471-2164-9-87

Open Data