Research article
Genome-wide analysis of the rice and arabidopsis non-specific lipid transfer protein (nsLtp) gene families and identification of wheat nsLtp genes by EST data mining
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* Corresponding author: Marie-Françoise Gautier gautier@supagro.inra.fr
1 UMR1098 Développement et Amélioration des Plantes, INRA, F-34060 Montpellier, France
2 UMR1097 Diversité et Adaptation des Plantes Cultivées, INRA, F-34130 Mauguio, France
3 The Sainsbury Laboratory, John Innes Centre, Colney Lane, Norwich, NR4 7UH, UK
BMC Genomics 2008, 9:86 doi:10.1186/1471-2164-9-86
Published: 21 February 2008Additional files
Additional file 1:
Rice and arabidopsis genes encoding proteins with a Pfam domain PF00234 not identified as nsLTPs.
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Additional file 2:
Triticum aestivum nsLtp genes obtained from EST database analysis and features of the deduced proteins. Identical proteins refer to their relative redundant form.
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Additional file 3:
Alignment of the rice, arabidopsis and wheat nsLTP sequences. The mature sequences of the 122 non-redundant wheat nsLTPs, the 49 rice nsLTPs, and the 45 arabidopsis nsLTPs were aligned using HMMalign and then manually refined. The phylogenetic tree was built from this protein alignment (fasta format).
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